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Stem-loop binding protein is a multifaceted cellular regulator of HIV-1 replication
Ming Li, Lynne D. Tucker, John M. Asara, Collins K. Cheruiyot, Huafei Lu, Zhijin J. Wu, Michael C. Newstein, Mark S. Dooner, Jennifer Friedman, Michelle A. Lally, Bharat Ramratnam
Ming Li, Lynne D. Tucker, John M. Asara, Collins K. Cheruiyot, Huafei Lu, Zhijin J. Wu, Michael C. Newstein, Mark S. Dooner, Jennifer Friedman, Michelle A. Lally, Bharat Ramratnam
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Research Article AIDS/HIV

Stem-loop binding protein is a multifaceted cellular regulator of HIV-1 replication

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Abstract

A rare subset of HIV-1–infected individuals is able to maintain plasma viral load (VL) at low levels without antiretroviral treatment. Identifying the mechanisms underlying this atypical response to infection may lead to therapeutic advances for treating HIV-1. Here, we developed a proteomic analysis to compare peripheral blood cell proteomes in 20 HIV-1–infected individuals who maintained either high or low VL with the aim of identifying host factors that impact HIV-1 replication. We determined that the levels of multiple histone proteins were markedly decreased in cohorts of individuals with high VL. This reduction was correlated with lower levels of stem-loop binding protein (SLBP), which is known to control histone metabolism. Depletion of cellular SLBP increased promoter engagement with the chromatin structures of the host gene high mobility group protein A1 (HMGA1) and viral long terminal repeat (LTR), which led to higher levels of HIV-1 genomic integration and proviral transcription. Further, we determined that TNF-α regulates expression of SLBP and observed that plasma TNF-α levels in HIV-1–infected individuals correlated directly with VL levels and inversely with cellular SLBP levels. Our findings identify SLBP as a potentially important cellular regulator of HIV-1, thereby establishing a link between histone metabolism, inflammation, and HIV-1 infection.

Authors

Ming Li, Lynne D. Tucker, John M. Asara, Collins K. Cheruiyot, Huafei Lu, Zhijin J. Wu, Michael C. Newstein, Mark S. Dooner, Jennifer Friedman, Michelle A. Lally, Bharat Ramratnam

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Figure 4

SLBP depletion led to higher levels of HIV-1 integration and replication.

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SLBP depletion led to higher levels of HIV-1 integration and replication...
(A) SLBP depletion in HeLa-T4, CEM, and primary CD4+ T lymphocytes led to higher (2.7- to 4.4-fold) levels of HIV-1 integration at 48 hours after infection as quantified by Alu-PCR. (B and C) Among the 8 critical cellular factors (BANF1, EED, HMGA1, SMARCB1, IPO7, TNPO3, LEDGF, and UNG2) involved in HIV-1 integration, SLBP depletion led to increases in HMGA1 mRNA (B) and protein (C) expression. The fold changes in protein levels were quantified by densitometric analysis and are noted on the right of gels. (D) The impact of SLBP and HMGA1 on viral integration was further validated by simultaneous depletion of both proteins. When both SLBP and HMGA1 were depleted, HIV-1 integration levels were reduced and approached control conditions. (E) SLBP depletion in HeLa-T4, CEM, and primary CD4+ T lymphocytes led to significantly higher (1.7- to 2.3-fold) levels of unspliced HIV-1 mRNA expression at 48 hours after infection as quantified by real-time PCR. (F) The specificity of SLBP depletion on viral RNA levels was validated by a siRNA-resistant SLBP cDNA variant [SLBP(res.)]. Levels of HIV-1 unspliced RNA increased (~2.4-fold) upon SLBP depletion but returned toward control levels when SLBP siRNA–treated cells expressed SLBP(res.). (G) SLBP depletion in HeLa-T4, CEM, and primary CD4+ T lymphocytes led to significantly higher (~1.6- to 2.1-fold) levels of p24 in culture supernatant at 48 hours after infection as quantified by ELISA. Western blots were used to measure and verify HMGA1 and SLBP protein levels for each experimental condition. (n = 3 biologic replicates.) Student’s t test was performed for A, B, E, and G. One-way ANOVA with post hoc Tukey’s test was used for D and F. *P < 0.05, **P < 0.01; error bars represent ± SD. Si(h), short interfering (hairpin) RNA.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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