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Cancer stem cells synthesize proline to attenuate oxidative stress
Weichi Wu, Po Zhang, Donghai Wang, Xujia Wu, Qiulian Wu, Daqi Li, Tengfei Huang, Rui Wang, Huan Li, Hailong Mi, Suchet Taori, Fanen Yuan, Tingting Duan, Zhiye Chen, Huairui Yuan, Jeremy N. Rich
Weichi Wu, Po Zhang, Donghai Wang, Xujia Wu, Qiulian Wu, Daqi Li, Tengfei Huang, Rui Wang, Huan Li, Hailong Mi, Suchet Taori, Fanen Yuan, Tingting Duan, Zhiye Chen, Huairui Yuan, Jeremy N. Rich
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Research Article Cell biology Metabolism Oncology

Cancer stem cells synthesize proline to attenuate oxidative stress

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Abstract

Cancers reprogram their metabolism to provide anabolic needs without driving excessive oxidative stress. Attention has focused on glucose metabolism, yet amino acid synthesis and degradation also promote tumor cell states and growth. Here, we assessed amino acids that maintain cancer stem cells in glioblastoma and found increased proline levels relative to differentiated tumor progeny through increased proline synthesis. Cancer stem cells preferentially expressed the signaling molecule FAM3C induced by the stem cell transcription factor SOX2 to drive expression of proline synthesis enzymes. FAM3C classically mediated cellular responses as a secreted protein but gained intracellular functions in cancer stem cells through binding the histone reader spindlin 1 (SPIN1), thereby preventing its lysosomal degradation, assisting its nuclear localization, and promoting epigenetic regulation of proline synthesis. Proline synthesis depleted ROS, and genetic targeting of FAM3C attenuated ROS scavenging, whereas SPIN1 OE restored ROS levels. Molecular docking identified tucatinib as a brain-penetrant pharmacologic disruptor of FAM3C-SPIN1 interactions, promoting SPIN1 degradation and reducing intracellular proline levels. Thus, cancer stem cells induced a favorable metabolic state through proline synthesis and ROS depletion, revealing potential therapeutic dependencies.

Authors

Weichi Wu, Po Zhang, Donghai Wang, Xujia Wu, Qiulian Wu, Daqi Li, Tengfei Huang, Rui Wang, Huan Li, Hailong Mi, Suchet Taori, Fanen Yuan, Tingting Duan, Zhiye Chen, Huairui Yuan, Jeremy N. Rich

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Figure 2

FAM3C regulates proline biosynthesis in GSCs.

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FAM3C regulates proline biosynthesis in GSCs.
(A) Diagram depicting the ...
(A) Diagram depicting the screening strategy to identify potential regulators of proline synthesis in GSCs. (B) Rank of 16 genes identified in A ranked according to their correlation with the GSC stemness index in TCGA-GBM. The top 7 ranked genes are labeled. (C) Pearson’s correlation of FAM3C expression and proline synthesis in RNA-seq data of TCGA_GBM (n = 150). The red line shows linear regression. (D) Changes of cellular metabolite levels measured by LC-MS in GSC23 cells with shCONT, shFAM3C.579, or shFAM3C.261 for 48 hours (n = 3 independent experiments). ***P < 0.001 and ****P < 0.0001, by 2-tailed, unpaired t test. (E) KEGG pathway analysis of downregulated genes after FAM3C KD in GSC23 cells, ranked by P values. (F) Heatmap summarizing the differential transcript expression of ALDH18A1 (P5CS), PYCR1, and PYCR2 between control and FAM3C-KD GSCs. (G) Immunoblot analysis of key enzymes in proline synthesis in GSCs with or without FAM3C KD. (H and I) qRT-PCR analysis of key enzymes in proline synthesis in GSC23 (H) and GSC387 (I) with or without FAM3C KD (n = 3 independent experiments). Data are presented as the mean ± SD. Statistical analysis was performed using a 1-way ANOVA followed by a multiple-comparison test.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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