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SHMT2 deficiency disrupts transcriptional regulation through homocysteine-mediated suppression of histone lactylation in Huntington’s disease models
Mingqin Lu, Kexin Li, Shanshan Wu, Zhilong Zheng, Xinyue Li, Shengda Wang, Hanwen Yu, Chunyue Liu, Yueqing Jiang, Xueqin Song, Yan Liu, Xing Guo
Mingqin Lu, Kexin Li, Shanshan Wu, Zhilong Zheng, Xinyue Li, Shengda Wang, Hanwen Yu, Chunyue Liu, Yueqing Jiang, Xueqin Song, Yan Liu, Xing Guo
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Research Article Aging Cell biology Neuroscience

SHMT2 deficiency disrupts transcriptional regulation through homocysteine-mediated suppression of histone lactylation in Huntington’s disease models

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Abstract

Huntington’s disease (HD) is a fatal neurodegenerative disorder characterized by progressive motor dysfunction, cognitive decline, and striatal neuron degeneration, primarily affecting medium spiny neurons (MSNs). Despite extensive research, the underlying metabolic vulnerabilities contributing to HD pathogenesis remain poorly understood. In this study, we employed RNA-seq and metabolomics analyses to identify marked dysregulation of 1-carbon metabolism in HD. We validated that SHMT2, a key mitochondrial enzyme in the mitochondrial 1-carbon pathway, was substantially downregulated in HD patient–derived iPSC-differentiated human striatal organoids (hSOs) and YAC128 mice. Functionally, pharmacologic inhibition or genetic deletion of SHMT2 exacerbated mutant huntingtin aggregation, induced MSN degeneration in hSOs, and impaired motor function in WT mice. Conversely, SHMT2 overexpression attenuated MSN degeneration in HD-hSOs and improved motor performance in YAC128 mice. Mechanistically, SHMT2 deficiency led to accumulation of homocysteine, which interacted with AARS1 and suppressed histone lactylation, thereby perturbing transcriptional regulation and associating with neurodegenerative phenotypes. Finally, we demonstrated that the HD clinical drug haloperidol modulated SHMT2 expression and restored histone lactylation, providing a pharmacologic tool to probe SHMT2-dependent metabolic and epigenetic regulation in HD models. These findings highlight a metabolic-epigenetic axis as a promising therapeutic target for HD.

Authors

Mingqin Lu, Kexin Li, Shanshan Wu, Zhilong Zheng, Xinyue Li, Shengda Wang, Hanwen Yu, Chunyue Liu, Yueqing Jiang, Xueqin Song, Yan Liu, Xing Guo

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Figure 1

Multi-omics analysis reveals 1C metabolism dysregulation and reduced SHMT2 expression in HD models.

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Multi-omics analysis reveals 1C metabolism dysregulation and reduced SHM...
(A) Principal component analysis (PCA) of metabolomic profiles in HdhQ7 and HdhQ111 cells. (B) Volcano plot showing substantially altered metabolites in HdhQ111 cells relative to HdhQ7 cells. One-carbon metabolism–related metabolites are highlighted. (C) Pathway enrichment analysis of markedly altered metabolites between HdhQ7 and HdhQ111 cells. (D) Volcano plot of DEGs in HD-hSOs (HD42) versus control hSOs (RC01001-A), showing widespread transcriptional alterations. (E) GSEA (GO Biological Process) showing pathway changes in HD-hSOs. (F) GSEA enrichment plot for the 1-carbon metabolic process gene set. (G) Immunoblot analysis of SHMT2 protein levels in hSOs derived from HD patient iPSCs (HD42) and iPSCs from a control line (ihtc-03) at D30 and D60 (n = 3). (H) Immunoblot analysis of SHMT2 protein levels in additional hSOs derived from HD patient iPSCs (HD66 and HD40) and control iPSCs (IMR90-4 and RC01001-A) at D30 (n = 3). (I) Soluble and insoluble HTTEx1-Q23/Q73 in control and SHMT2-knockdown HdhQ7 cells transfected with Myc-tagged HTTEx1-Q23 or HTTEx1-Q73 for 48 hours (n = 3). (J) Representative immunofluorescence images and quantification of polyQ aggregates in control and SHMT2-knockdown HdhQ7 cells transfected with GFP-tagged HTTEx1-Q23 or HTTEx1-Q73. Arrows indicate visible aggregates (scale bar: 20 μm; n = 3). Data are shown as the mean ± SEM. Unpaired t test was used for G, nested t test was used for H, and 1-way ANOVA with Tukey’s test was used for I and J. *P < 0.05, **P < 0.01, ****P < 0.0001.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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