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Single-cell deconvolution reveals high lineage- and location-dependent heterogeneity in mesenchymal multivisceral stage 4 colorectal cancer
Christopher Berlin, … , Philipp A. Holzner, Rebecca Kesselring
Christopher Berlin, … , Philipp A. Holzner, Rebecca Kesselring
Published December 28, 2023
Citation Information: J Clin Invest. 2024;134(5):e169576. https://doi.org/10.1172/JCI169576.
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Research Article Cell biology Oncology

Single-cell deconvolution reveals high lineage- and location-dependent heterogeneity in mesenchymal multivisceral stage 4 colorectal cancer

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Abstract

Metastasized colorectal cancer (CRC) is associated with a poor prognosis and rapid disease progression. Besides hepatic metastasis, peritoneal carcinomatosis is the major cause of death in Union for International Cancer Control (UICC) stage IV CRC patients. Insights into differential site-specific reconstitution of tumor cells and the corresponding tumor microenvironment are still missing. Here, we analyzed the transcriptome of single cells derived from murine multivisceral CRC and delineated the intermetastatic cellular heterogeneity regarding tumor epithelium, stroma, and immune cells. Interestingly, we found an intercellular site-specific network of cancer-associated fibroblasts and tumor epithelium during peritoneal metastasis as well as an autologous feed-forward loop in cancer stem cells. We furthermore deciphered a metastatic dysfunctional adaptive immunity by a loss of B cell–dependent antigen presentation and consecutive effector T cell exhaustion. Furthermore, we demonstrated major similarities of this murine metastatic CRC model with human disease and — based on the results of our analysis — provided an auspicious site-specific immunomodulatory treatment approach for stage IV CRC by intraperitoneal checkpoint inhibition.

Authors

Christopher Berlin, Bernhard Mauerer, Pierre Cauchy, Jost Luenstedt, Roman Sankowski, Lisa Marx, Reinhild Feuerstein, Luisa Schaefer, Florian R. Greten, Marina Pesic, Olaf Groß, Marco Prinz, Naomi Ruehl, Laura Miketiuk, Dominik Jauch, Claudia Laessle, Andreas Jud, Esther A. Biesel, Hannes Neeff, Stefan Fichtner-Feigl, Philipp A. Holzner, Rebecca Kesselring

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Figure 4

Location-specific antitumoral immunity during CRC metastasis.

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Location-specific antitumoral immunity during CRC metastasis.
(A) UMAP p...
(A) UMAP plot of 15,714 CD45+CD11b– immune cells identified by joint application of RCA and CCA and color coded by cell subtype (upper panel). Proportions of all cell types in PT, LM, and PC (lower panel) on average are shown. (B) UMAP plot of T and NK cells identified by joint application of RCA and CCA and color coded by cell type (upper panel). Proportions of all cell types in PT, LM, and PC (lower panel) on average are shown. (C) Metabolic activity analysis in T cells and NK cells of PT, LM, and PC. Metabolic score depicted as box plot. (D) Expression of significantly differentiated genes involved in activity and exhaustion of cytotoxic CD8+ T cells from PT, LM, and PC centered to the average expression of each gene across all locations. Dot size represents the proportion of expressing cells in each cluster. P < 0.05. (E) Expression level of Gzmb and Prf1 in NK cells from PT, LM, and PC depicted as violin plot. ***P < 0.001, Student’s t test.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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