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Single-cell deconvolution reveals high lineage- and location-dependent heterogeneity in mesenchymal multivisceral stage 4 colorectal cancer
Christopher Berlin, … , Philipp A. Holzner, Rebecca Kesselring
Christopher Berlin, … , Philipp A. Holzner, Rebecca Kesselring
Published December 28, 2023
Citation Information: J Clin Invest. 2024;134(5):e169576. https://doi.org/10.1172/JCI169576.
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Research Article Cell biology Oncology

Single-cell deconvolution reveals high lineage- and location-dependent heterogeneity in mesenchymal multivisceral stage 4 colorectal cancer

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Abstract

Metastasized colorectal cancer (CRC) is associated with a poor prognosis and rapid disease progression. Besides hepatic metastasis, peritoneal carcinomatosis is the major cause of death in Union for International Cancer Control (UICC) stage IV CRC patients. Insights into differential site-specific reconstitution of tumor cells and the corresponding tumor microenvironment are still missing. Here, we analyzed the transcriptome of single cells derived from murine multivisceral CRC and delineated the intermetastatic cellular heterogeneity regarding tumor epithelium, stroma, and immune cells. Interestingly, we found an intercellular site-specific network of cancer-associated fibroblasts and tumor epithelium during peritoneal metastasis as well as an autologous feed-forward loop in cancer stem cells. We furthermore deciphered a metastatic dysfunctional adaptive immunity by a loss of B cell–dependent antigen presentation and consecutive effector T cell exhaustion. Furthermore, we demonstrated major similarities of this murine metastatic CRC model with human disease and — based on the results of our analysis — provided an auspicious site-specific immunomodulatory treatment approach for stage IV CRC by intraperitoneal checkpoint inhibition.

Authors

Christopher Berlin, Bernhard Mauerer, Pierre Cauchy, Jost Luenstedt, Roman Sankowski, Lisa Marx, Reinhild Feuerstein, Luisa Schaefer, Florian R. Greten, Marina Pesic, Olaf Groß, Marco Prinz, Naomi Ruehl, Laura Miketiuk, Dominik Jauch, Claudia Laessle, Andreas Jud, Esther A. Biesel, Hannes Neeff, Stefan Fichtner-Feigl, Philipp A. Holzner, Rebecca Kesselring

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Figure 2

Location-specific metabolic reprogramming of the STEM in multivisceral CRC.

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Location-specific metabolic reprogramming of the STEM in multivisceral C...
(A) Metabolic activity analysis in the STEM of PT, LM, and PC. Circle size and color represent scaled metabolic score. (B) Expression of the top 3 differentially expressed metabolic genes in the STEM of PT, LM, and PC centered to the average expression of each gene across all locations. Dot size represents the proportion of expressing cells in each cluster. P < 0.05. (C) Representative Western blot showing expression of depicted proteins in pooled epithelial lysates (n = 5 animals per column) from murine PT, LM, and PC. Separate loading control for each Western blot: HSP90. The experiment was performed twice. (D) Significant L-R pairs between any pair of 2 epithelial cell populations in PT, LM, and PC. Width represents communication probability. (E) Heatmap shows the relative importance in depicted signaling pathways for each cell group based on the computed centrality measures in PT, LM, and PC. Arrows indicate outgoing signaling patterns from CSCs.

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