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Decitabine priming increases anti–PD-1 antitumor efficacy by promoting CD8+ progenitor exhausted T cell expansion in tumor models
Xiang Li, … , Weidong Han, Jing Nie
Xiang Li, … , Weidong Han, Jing Nie
Published February 28, 2023
Citation Information: J Clin Invest. 2023;133(7):e165673. https://doi.org/10.1172/JCI165673.
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Research Article Immunology Oncology

Decitabine priming increases anti–PD-1 antitumor efficacy by promoting CD8+ progenitor exhausted T cell expansion in tumor models

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Abstract

CD8+ exhausted T cells (Tex) are heterogeneous. PD-1 inhibitors reinvigorate progenitor Tex, which subsequently differentiate into irresponsive terminal Tex. The ability to maintain a capacity for durable proliferation of progenitor Tex is important, but the mechanism remains unclear. Here, we showed CD8+ progenitor Tex pretreated with decitabine, a low-dose DNA demethylating agent, had enhanced proliferation and effector function against tumors after anti–PD-1 treatment in vitro. Treatment with decitabine plus anti–PD-1 promoted the activation and expansion of tumor-infiltrated CD8+ progenitor Tex and efficiently suppressed tumor growth in multiple tumor models. Transcriptional and epigenetic profiling of tumor-infiltrated T cells demonstrated that the combination of decitabine plus anti–PD-1 markedly elevated the clonal expansion and cytolytic activity of progenitor Tex compared with anti–PD-1 monotherapy and restrained CD8+ T cell terminal differentiation. Strikingly, decitabine plus anti–PD-1 sustained the expression and activity of the AP-1 transcription factor JunD, which was reduced following PD-1 blockade therapy. Downregulation of JunD repressed T cell proliferation, and activation of JNK/AP-1 signaling in CD8+ T cells enhanced the antitumor capacity of PD-1 inhibitors. Together, epigenetic agents remodel CD8+ progenitor Tex populations and improve responsiveness to anti–PD-1 therapy.

Authors

Xiang Li, Yaru Li, Liang Dong, Yixin Chang, Xingying Zhang, Chunmeng Wang, Meixia Chen, Xiaochen Bo, Hebing Chen, Weidong Han, Jing Nie

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Figure 7

DP treatment reprograms transcriptional and epigenetic profile of CD8+ progenitor Tex with sustained activity of AP-1 family member.

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DP treatment reprograms transcriptional and epigenetic profile of CD8+ p...
(A) GO analysis of upregulated genes (688 genes, P < 0.05, 2-sided unpaired Wilcoxon test) for progenitor Tex (C0) in DP group versus P group. Selected GO terms with Benjamini-Hochberg Padj < 0.05. (B) Volcano plot showing DEGs of progenitor Tex (C0) in DP group versus P group. Genes with P < 0.05 (2-sided unpaired Wilcoxon test) are colored and some important upregulated genes are labeled. (C) Heatmap showing the expression level of upregulated genes of DP group (versus P group) in progenitor Tex cells for each group (same genes used in Figure 7A). The genes are clustered into 7 groups by hierarchical cluster analysis. (D) Dot plot showing GO terms of upregulated genes of each module as shown in Figure 7C. The size of the dot encodes the ratio of genes in each GO term, and its color encodes the Benjamini-Hochberg Padj values. (E) Gene annotations of changed peaks between the DP versus P groups in CD3+ T cells. The numbers of differentially open gene regulatory regions for the indicated genes after DP combination versus P monotherapy are shown. (F) The significant enriched motifs of gained peaks between DP and P groups. Motifs of TFs with Benjamini Padj < 0.05 (calculated by HOMER) are shown and important TFs are labeled. FC represents the ratio of the percentage of gained peaks with motif and the percentage of background peaks with motif. (G) Integrated transcriptional regulatory network inferred by SCENIC showing target genes of TF JunD whose importance are more than 30. Dot size represents the importance of target genes. Colors represent the log2 FC of averaged expression between the DP and P groups.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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