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Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists
Amin Abedini, Andrea Sánchez-Navaro, Junnan Wu, Konstantin A. Klötzer, Ziyuan Ma, Bibek Poudel, Tomohito Doke, Michael S. Balzer, Julia Frederick, Hana Cernecka, Hongbo Liu, Xiujie Liang, Steven Vitale, Peter Kolkhof, Katalin Susztak
Amin Abedini, Andrea Sánchez-Navaro, Junnan Wu, Konstantin A. Klötzer, Ziyuan Ma, Bibek Poudel, Tomohito Doke, Michael S. Balzer, Julia Frederick, Hana Cernecka, Hongbo Liu, Xiujie Liang, Steven Vitale, Peter Kolkhof, Katalin Susztak
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Research Article Genetics Nephrology

Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists

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Abstract

Mineralocorticoid excess commonly leads to hypertension (HTN) and kidney disease. In our study, we used single-cell expression and chromatin accessibility tools to characterize the mineralocorticoid target genes and cell types. We demonstrated that mineralocorticoid effects were established through open chromatin and target gene expression, primarily in principal and connecting tubule cells and, to a lesser extent, in segments of the distal convoluted tubule cells. We examined the kidney-protective effects of steroidal and nonsteroidal mineralocorticoid antagonists (MRAs), as well as of amiloride, an epithelial sodium channel inhibitor, in a rat model of deoxycorticosterone acetate, unilateral nephrectomy, and high-salt consumption–induced HTN and cardiorenal damage. All antihypertensive therapies protected against cardiorenal damage. However, finerenone was particularly effective in reducing albuminuria and improving gene expression changes in podocytes and proximal tubule cells, even with an equivalent reduction in blood pressure. We noted a strong correlation between the accumulation of injured/profibrotic tubule cells expressing secreted posphoprotein 1 (Spp1), Il34, and platelet-derived growth factor subunit b (Pdgfb) and the degree of fibrosis in rat kidneys. This gene signature also showed a potential for classifying human kidney samples. Our multiomics approach provides fresh insights into the possible mechanisms underlying HTN-associated kidney disease, the target cell types, the protective effects of steroidal and nonsteroidal MRAs, and amiloride.

Authors

Amin Abedini, Andrea Sánchez-Navaro, Junnan Wu, Konstantin A. Klötzer, Ziyuan Ma, Bibek Poudel, Tomohito Doke, Michael S. Balzer, Julia Frederick, Hana Cernecka, Hongbo Liu, Xiujie Liang, Steven Vitale, Peter Kolkhof, Katalin Susztak

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Figure 3

MR target cell types and gene-regulatory network in rat kidneys.

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MR target cell types and gene-regulatory network in rat kidneys.
(A) Fea...
(A) Feature plots of open chromatin, motif in open chromatin, and gene expression of Nr3c2 (MR), and Nr3c1 (GR), MR target genes, and GR target genes. Expression levels of MR target genes and GR target genes are based on the mean expression in each cell type. (B) Bubble plots of open chromatin, motif, and gene expression of Nr3c2 (MR) and Nr3c1 (GR), including their target genes, with the mean expression displayed for each cell type. (C) Bubble dot plots of mineralocorticoid target genes and the GR (Nr3c1) in the snRNA-Seq data set before and after subclustering of DCT and PC cells. The size of the dots indicates the percentage of positive cells, and the darkness of the color indicates average expression. (D) Schematic of MR target genes affected by DOCA in the DOCA-salt rat nephropathy model. Genes are colored blue (lower expression), red (higher expression), or white (unchanged expression). Notably, Atp1a1 and Atp1b1 showed increased expression, whereas Hsd11b2 expression was lower in all cells. Pik3r3 expression was higher in PC cells. ENaC genes (Scnn1a, Scnn1b, Scnn1g), Wnk1, and Aqp2 showed decreased expression. ROMK, renal outer medullary potassium channel; Nox4, NADPH oxidase 4.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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