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Long noncoding RNA MIR4435-2HG enhances metabolic function of myeloid dendritic cells from HIV-1 elite controllers
Ciputra Adijaya Hartana, … , Mathias Lichterfeld, Xu G. Yu
Ciputra Adijaya Hartana, … , Mathias Lichterfeld, Xu G. Yu
Published May 3, 2021
Citation Information: J Clin Invest. 2021;131(9):e146136. https://doi.org/10.1172/JCI146136.
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Research Article AIDS/HIV Immunology

Long noncoding RNA MIR4435-2HG enhances metabolic function of myeloid dendritic cells from HIV-1 elite controllers

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Abstract

Restriction of HIV-1 replication in elite controllers (ECs) is frequently attributed to T cell–mediated immune responses, while the specific contribution of innate immune cells is less clear. Here, we demonstrate an upregulation of the host long noncoding RNA (lncRNA) MIR4435-2HG in primary myeloid dendritic cells (mDCs) from ECs. Elevated expression of this lncRNA in mDCs was associated with a distinct immunometabolic profile, characterized by increased oxidative phosphorylation and glycolysis activities in response to TLR3 stimulation. Using functional assays, we show that MIR4435-2HG directly influenced the metabolic state of mDCs, likely through epigenetic mechanisms involving H3K27ac enrichment at an intronic enhancer in the RPTOR gene locus, the main component of the mammalian target of rapamycin complex 1 (mTORC1). Together, these results suggest a role of MIR4435-2HG for enhancing immunometabolic activities of mDCs in ECs through targeted epigenetic modifications of a member of the mTOR signaling pathway.

Authors

Ciputra Adijaya Hartana, Yelizaveta Rassadkina, Ce Gao, Enrique Martin-Gayo, Bruce D. Walker, Mathias Lichterfeld, Xu G. Yu

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Figure 7

MIR4435-2HG modulates expression of genes involved in mDC metabolic activities.

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MIR4435-2HG modulates expression of genes involved in mDC metabolic act...
(A) The scheme of the experimental design for functional assays. (B) Heatmap displaying DEGs (FDR-adjusted P value < 0.05 and base mean > 1) between mDCs nucleofected with MIR4435-2HG siRNA and scramble siRNA after 2 μg/mL Poly(I:C) stimulation for 24 hours using RNAseq analysis. (C) Selected significant canonical pathways predicted by IPA of DEGs from B. Predicted up- and downregulated pathways were marked in red and blue, respectively. Pathways with no predicted change were marked in gray. Cutoff was established at –log (P value) ≥ 2.5 (yellow dashed line) and z score ≥ 1 or ≤ –1.

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