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Maintenance DNA methylation is essential for regulatory T cell development and stability of suppressive function
Kathryn A. Helmin, … , Samuel E. Weinberg, Benjamin D. Singer
Kathryn A. Helmin, … , Samuel E. Weinberg, Benjamin D. Singer
Published September 8, 2020
Citation Information: J Clin Invest. 2020;130(12):6571-6587. https://doi.org/10.1172/JCI137712.
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Research Article Autoimmunity Immunology

Maintenance DNA methylation is essential for regulatory T cell development and stability of suppressive function

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Abstract

Tregs require Foxp3 expression and induction of a specific DNA hypomethylation signature during development, after which Tregs persist as a self-renewing population that regulates immune system activation. Whether maintenance DNA methylation is required for Treg lineage development and stability and how methylation patterns are maintained during lineage self-renewal remain unclear. Here, we demonstrate that the epigenetic regulator ubiquitin-like with plant homeodomain and RING finger domains 1 (Uhrf1) is essential for maintenance of methyl-DNA marks that stabilize Treg cellular identity by repressing effector T cell transcriptional programs. Constitutive and induced deficiency of Uhrf1 within Foxp3+ cells resulted in global yet nonuniform loss of DNA methylation, derepression of inflammatory transcriptional programs, destabilization of the Treg lineage, and spontaneous inflammation. These findings support a paradigm in which maintenance DNA methylation is required in distinct regions of the Treg genome for both lineage establishment and stability of identity and suppressive function.

Authors

Kathryn A. Helmin, Luisa Morales-Nebreda, Manuel A. Torres Acosta, Kishore R. Anekalla, Shang-Yang Chen, Hiam Abdala-Valencia, Yuliya Politanska, Paul Cheresh, Mahzad Akbarpour, Elizabeth M. Steinert, Samuel E. Weinberg, Benjamin D. Singer

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Figure 2

Tregs are reduced in the periphery of 3- to 4-week-old Treg-specific Uhrf1-deficient mice.

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Tregs are reduced in the periphery of 3- to 4-week-old Treg-specific Uhr...
(A) Foxp3+ cells as a frequency of CD3ε+CD4+ cells in blood, spleen, and lung shown as representative flow cytometry contour plots. (B) CD25hiFoxp3+ cells expressed as a percentage of CD3ε+CD4+ cells for blood, spleen, and lung. For blood, n = 3 (Uhrf1+/flFoxp3YFP-Cre littermate) and n = 7 (Uhrf1fl/flFoxp3YFP-Cre); for spleen, n = 5 (littermate) and n = 9 (Uhrf1fl/flFoxp3YFP-Cre); for lung, n = 6 (littermate) and n = 10 (Uhrf1fl/flFoxp3YFP-Cre). (C) Total spleen and lung CD3ε+CD4+Foxp3+ cells. For spleen, n = 5 (littermate) and 8 (Uhrf1fl/flFoxp3YFP-Cre); for lung, n = 5 (littermate) and 10 (Uhrf1fl/flFoxp3YFP-Cre). (D) Thymic Foxp3+ cell frequency. Representative flow cytometry contour plots of CD4–single-positive (SP) thymocytes from littermate and Uhrf1fl/flFoxp3YFP-Cre mice. Foxp3+ cells are shown as a percentage of the CD4SP population. n = 5 (littermate) and n = 7 (Uhrf1fl/flFoxp3YFP-Cre). (E) Proliferating (Ki67+) cells as a percentage of CD4SP Foxp3+ thymocytes. n = 5 (littermate) and 7 (Uhrf1fl/flFoxp3YFP-Cre). (F) Total thymic Tregs. n = 5 (littermate) and 7 (Uhrf1fl/flFoxp3YFP-Cre). (G) Apoptotic (annexin V+) cells as a percentage of CD4SP Foxp3+ thymocytes. n = 7 (littermate) and 6 (Uhrf1fl/flFoxp3YFP-Cre). Summary plots show all data points with mean and SD. *P < 0.05; **P < 0.01; †q or P < 0.001; ‡q < 0.0001, NS, not significant by the 2-stage linear step-up procedure of Benjamini, Krieger, and Yekutieli with Q = 5% (B) or Mann-Whitney U test (C–G); exact q and P values are in Supplemental Data. FSC-A, forward scatter area. See Supplemental Table 3 for fluorochrome abbreviations.

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