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DNA methyltransferase inhibition overcomes diphthamide pathway deficiencies underlying CD123-targeted treatment resistance
Katsuhiro Togami, … , Cory M. Johannessen, Andrew A. Lane
Katsuhiro Togami, … , Cory M. Johannessen, Andrew A. Lane
Published August 22, 2019
Citation Information: J Clin Invest. 2019;129(11):5005-5019. https://doi.org/10.1172/JCI128571.
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Research Article Hematology Oncology

DNA methyltransferase inhibition overcomes diphthamide pathway deficiencies underlying CD123-targeted treatment resistance

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Abstract

The interleukin-3 receptor α subunit, CD123, is expressed in many hematologic malignancies including acute myeloid leukemia (AML) and blastic plasmacytoid dendritic cell neoplasm (BPDCN). Tagraxofusp (SL-401) is a CD123-targeted therapy consisting of interleukin-3 fused to a truncated diphtheria toxin payload. Factors influencing response to tagraxofusp other than CD123 expression are largely unknown. We interrogated tagraxofusp resistance in patients and experimental models and found that it was not associated with CD123 loss. Rather, resistant AML and BPDCN cells frequently acquired deficiencies in the diphthamide synthesis pathway, impairing tagraxofusp’s ability to ADP-ribosylate cellular targets. Expression of DPH1, encoding a diphthamide pathway enzyme, was reduced by DNA CpG methylation in resistant cells. Treatment with the DNA methyltransferase inhibitor azacitidine restored DPH1 expression and tagraxofusp sensitivity. We also developed a drug-dependent ADP-ribosylation assay in primary cells that correlated with tagraxofusp activity and may represent an additional novel biomarker. As predicted by these results and our observation that resistance also increased mitochondrial apoptotic priming, we found that the combination of tagraxofusp and azacitidine was effective in patient-derived xenografts treated in vivo. These data have important implications for clinical use of tagraxofusp and led to a phase 1 study combining tagraxofusp and azacitidine in myeloid malignancies.

Authors

Katsuhiro Togami, Timothy Pastika, Jason Stephansky, Mahmoud Ghandi, Amanda L. Christie, Kristen L. Jones, Carl A. Johnson, Ross W. Lindsay, Christopher L. Brooks, Anthony Letai, Jeffrey W. Craig, Olga Pozdnyakova, David M. Weinstock, Joan Montero, Jon C. Aster, Cory M. Johannessen, Andrew A. Lane

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Figure 4

Tagraxofusp resistance is associated with hypermethylation of DPH1 locus CpGs, and azacitidine restores diphthamide pathway activity and tagraxofusp sensitivity.

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Tagraxofusp resistance is associated with hypermethylation of DPH1 locus...
(A) Percentage of methylated CpGs in the DPH1 locus are shown for the indicated genomic positions in parental THP1 cells and 2 independent tagraxofusp-resistant subclones, before and after 2 weeks of pulsatile treatment with noncytotoxic doses of azacitidine. (B) Quantitative RT-PCR for DPH1 expression in parental THP1 cells and a tagraxofusp-resistant subclone treated with vehicle or azacitidine (n = 3 replicates each). Dots represent relative expression, bars are ±SD. Conditions compared by 1-way ANOVA with Dunnett’s multiple-comparisons correction, adjusted P values shown. Data are representative of 2 independent resistant subclones with similar results. (C) In vitro ADP-ribosylation assay in the presence of tagraxofusp (top row) and Western blotting for eEF2, DPH1, and actin (bottom rows) are shown for parental THP1 and 3 independent tagraxofusp-resistant subclones (R1–R3) after 2 weeks of pulsatile treatment with noncytotoxic doses of azacitidine or vehicle. (D) Tagraxofusp cytotoxicity assays in parental and tagraxofusp-resistant AML (THP1) and BPDCN (CAL1) cells after 2 weeks of pulsatile treatment with noncytotoxic doses of azacitidine or vehicle, or with weekly exposure to 1 μg/mL tagraxofusp. Each point was assessed in triplicate and plotted relative to cells growing in vehicle alone.
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