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Evolutionary history of metastatic breast cancer reveals minimal seeding from axillary lymph nodes
Ikram Ullah, Govindasamy-Muralidharan Karthik, Amjad Alkodsi, Una Kjällquist, Gustav Stålhammar, John Lövrot, Nelson-Fuentes Martinez, Jens Lagergren, Sampsa Hautaniemi, Johan Hartman, Jonas Bergh
Ikram Ullah, Govindasamy-Muralidharan Karthik, Amjad Alkodsi, Una Kjällquist, Gustav Stålhammar, John Lövrot, Nelson-Fuentes Martinez, Jens Lagergren, Sampsa Hautaniemi, Johan Hartman, Jonas Bergh
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Research Article Genetics Oncology

Evolutionary history of metastatic breast cancer reveals minimal seeding from axillary lymph nodes

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Abstract

Metastatic breast cancers are still incurable. Characterizing the evolutionary landscape of these cancers, including the role of metastatic axillary lymph nodes (ALNs) in seeding distant organ metastasis, can provide a rational basis for effective treatments. Here, we have described the genomic analyses of the primary tumors and metastatic lesions from 99 samples obtained from 20 patients with breast cancer. Our evolutionary analyses revealed diverse spreading and seeding patterns that govern tumor progression. Although linear evolution to successive metastatic sites was common, parallel evolution from the primary tumor to multiple distant sites was also evident. Metastatic spreading was frequently coupled with polyclonal seeding, in which multiple metastatic subclones originated from the primary tumor and/or other distant metastases. Synchronous ALN metastasis, a well-established prognosticator of breast cancer, was not involved in seeding the distant metastasis, suggesting a hematogenous route for cancer dissemination. Clonal evolution coincided frequently with emerging driver alterations and evolving mutational processes, notably an increase in apolipoprotein B mRNA–editing enzyme, catalytic polypeptide-like–associated (APOBEC-associated) mutagenesis. Our data provide genomic evidence for a role of ALN metastasis in seeding distant organ metastasis and elucidate the evolving mutational landscape during cancer progression.

Authors

Ikram Ullah, Govindasamy-Muralidharan Karthik, Amjad Alkodsi, Una Kjällquist, Gustav Stålhammar, John Lövrot, Nelson-Fuentes Martinez, Jens Lagergren, Sampsa Hautaniemi, Johan Hartman, Jonas Bergh

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Figure 5

Passive role of ALN metastasis in seeding distant metastases.

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Passive role of ALN metastasis in seeding distant metastases.
(A) The on...
(A) The only positive synchronous ALN metastasis, as well as 1 primary cancer and 2 regions of colon relapse 1 (Colon1.R1 and Colon2.R1) were sequenced for patient 2. (B) For patient 10, two regions of primary cancer (Primary1 and Primary2), 2 regions from the only positive lymph node (Lymph1 and Lymph2), and 3 regions of skin relapse 2 (Skin1.R2, Skin2.R2, and Skin3.R2) were sequenced. (C) For patient 14, one region of primary cancer, 1 region from 1 of 12 positive ALNs (Lymph), and 2 regions of brain relapse 1 (Brain1.R1 and Brain2.R1) were sequenced. Information about inferred subclones and their cellular prevalence is provided in the cluster table and density plot, respectively, in Supplemental Figure 6, B, I, and L, for patients 2, 10, and 14, respectively. Colon1.R1, colon block 1 relapse 1; Colon2.R1, colon block 2 relapse 1; Lymph1, ALN block 1; Lymph2, ALN block 2; Skin1.R2, skin block 1 relapse 2; Skin2.R2, skin block 2 relapse 2; Skin3.R2, skin block 3 relapse 2; Brain1.R1, brain block 1 relapse 1; and Brain2.R1, brain block 2 relapse 1.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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