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Histone methyltransferase SETD2 modulates alternative splicing to inhibit intestinal tumorigenesis
Huairui Yuan, … , Qintong Li, Jun Qin
Huairui Yuan, … , Qintong Li, Jun Qin
Published September 1, 2017; First published August 21, 2017
Citation Information: J Clin Invest. 2017;127(9):3375-3391. https://doi.org/10.1172/JCI94292.
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Categories: Research Article Oncology

Histone methyltransferase SETD2 modulates alternative splicing to inhibit intestinal tumorigenesis

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Abstract

The histone H3K36 methyltransferase SETD2 is frequently mutated or deleted in a variety of human tumors. Nevertheless, the role of SETD2 loss in oncogenesis remains largely undefined. Here, we found that SETD2 counteracts Wnt signaling and its inactivation promotes intestinal tumorigenesis in mouse models of colorectal cancer (CRC). SETD2 was not required for intestinal homeostasis under steady state; however, upon irradiation, genetic inactivation of Setd2 in mouse intestinal epithelium facilitated the self-renewal of intestinal stem/progenitor cells as well as tissue regeneration. Furthermore, depletion of SETD2 enhanced the susceptibility to tumorigenesis in the context of dysregulated Wnt signaling. Mechanistic characterizations indicated that SETD2 downregulation affects the alternative splicing of a subset of genes implicated in tumorigenesis. Importantly, we uncovered that SETD2 ablation reduces intron retention of dishevelled segment polarity protein 2 (DVL2) pre-mRNA, which would otherwise be degraded by nonsense-mediated decay, thereby augmenting Wnt signaling. The signaling cascades mediated by SETD2 were further substantiated by a CRC patient cohort analysis. Together, our studies highlight SETD2 as an integral regulator of Wnt signaling through epigenetic regulation of RNA processing during tissue regeneration and tumorigenesis.

Authors

Huairui Yuan, Ni Li, Da Fu, Jiale Ren, Jingyi Hui, Junjie Peng, Yongfeng Liu, Tong Qiu, Min Jiang, Qiang Pan, Ying Han, Xiaoming Wang, Qintong Li, Jun Qin

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Figure 6

SETD2 regulates cancer-associated AS in Apcmin/+ mice.

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SETD2 regulates cancer-associated AS in Apcmin/+ mice.
(A) Pie graph sum...
(A) Pie graph summary of AS in SETD2 KO mice versus control mice. (B) Venn diagram indicates that altered AS genes (gray) preferably exhibited the decrease of H3K36me3 codes within gene bodies in comparison with the promoter and intergenic regions (P < 0.001; χ2 test). (C) Snapshot of H3K36me3 ChIP-Seq signal at the represented gene locus in control and Setd2-knockout mice. (D and E) Knockout of Setd2 in intestinal epithelium causes a decrease of IR (D) and an increase of mRNA levels of the indicated genes (E). Primers for examinations of IR are indicated by the arrows. (F) H3K36me3 codes in the areas of IR-related genes in the IECs of Apcmin/+ and Apcmin/+; Setd2ΔIEC mice. (G) ChIP-qPCR analysis of total Pol II and Ser2-phosphorylated Pol II enrichments in the IR gene locus, as indicated by number in control and SETD2-deficient Apc-mutated IECs. Statistical comparisons in E–G were made using a 2-tailed Student’s t test. *P < 0.05; **P < 0.01.
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