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Base editing rescues seizures and sudden death in a SCN8A mutation-associated developmental epileptic encephalopathy model
Caeley M. Reever, Alexis R. Boscia, Tyler C.J. Deutsch, Mansi P. Patel, Raquel M. Miralles, Shrinidhi Kittur, Erik J. Fleischel, Atum M.L. Buo, Matthew S. Yorek, Miriam H. Meisler, Charles R. Farber, Manoj K. Patel
Caeley M. Reever, Alexis R. Boscia, Tyler C.J. Deutsch, Mansi P. Patel, Raquel M. Miralles, Shrinidhi Kittur, Erik J. Fleischel, Atum M.L. Buo, Matthew S. Yorek, Miriam H. Meisler, Charles R. Farber, Manoj K. Patel
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Research Article Genetics Neuroscience

Base editing rescues seizures and sudden death in a SCN8A mutation-associated developmental epileptic encephalopathy model

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Abstract

SCN8A encodes the voltage-gated sodium channel Nav1.6, which plays a key role in facilitating neuronal excitability. Mutations in SCN8A, particularly gain-of-function variants, cause SCN8A developmental and epileptic encephalopathy (DEE), a severe epilepsy syndrome characterized by seizures, cognitive dysfunction, movement disorders, and sudden unexpected death in epilepsy (SUDEP). The recurrent SCN8A variant R1872W impairs channel inactivation, causing neuronal hyperexcitability and seizures. Current treatments, including antiseizure medications, are often ineffective for patients with SCN8A DEE, highlighting the need for targeted therapies. We employed base editing to correct the R1872W SCN8A variant. An adenine base editor and guide RNA (SCN8A-ABE) were packaged within dual PhP.eB-adeno-associated viruses (AAVs) and administered to R1872W mice at P2. SCN8A-ABE significantly increased survival of mice expressing R1872W and either reduced seizure incidence and severity or eliminated seizure occurrence. Electrophysiological recordings revealed a rescue of seizure-associated neuronal hyperexcitability and suppression of the pathogenic persistent sodium current (INaP) in treated mice. Comorbidities, including diminished mobility and anxiety-like behaviors, were improved by SCN8A-ABE. These effects were achieved by a 32% absolute reduction in mutant transcripts, accompanied by conversion to SCN8A WT transcripts. Our findings demonstrate base editing as an effective targeted therapeutic approach for SCN8A DEEs by addressing the underlying genetic cause.

Authors

Caeley M. Reever, Alexis R. Boscia, Tyler C.J. Deutsch, Mansi P. Patel, Raquel M. Miralles, Shrinidhi Kittur, Erik J. Fleischel, Atum M.L. Buo, Matthew S. Yorek, Miriam H. Meisler, Charles R. Farber, Manoj K. Patel

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Figure 2

Treatment with SCN8A-ABE significantly increases survival and reduces seizure frequency.

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Treatment with SCN8A-ABE significantly increases survival and reduces se...
(A) Breeding strategy to generate Scn8aW/+-EMX1 mice. (B) P2 mice were injected intraventricularly (ICV) with a 5:1 ratio of AAV SCN8A-ABE to AAV-GFP with a total of 1.0 × 1011 viral genomes (vg) of the SCN8A-ABE treatment (5.0 × 1010 vg of each dual intein PhP.eB-ABE vectors along with 2.0 × 1010 vg PhP.e-GFP). Littermates were injected only with 2.0 × 1010 vg of PhP.e-GFP as a ‘sham’ viral transduction control. (C) Survival of Scn8aW/+-EMX1 mice is significantly increased with SCN8A-ABE treatment (purple, n = 23) compared with sham control Scn8aW/+-EMX1 mice (green, n = 25, P < 0.0001, Log-rank Mantel-Cox test). (D) Spontaneous seizure incidence (purple shading) in sham control (n = 10) and SCN8A-ABE treated (n = 11) Scn8aW/+-EMX1 mice over a period of 35 days. Red bar indicates seizure-induced death. In this panel (D), * indicates Scn8aW/+-EMX1 SCN8A-ABE–treated mice that experienced seizures, which correlate with panel H. (E) Sham control Scn8aW/+-EMX1 mice (n = 10) exhibit significantly more seizures than their SCN8A-ABE–treated counterparts (n = 11); (***P < 0.001, Mann-Whitney test). Bars represent mean ± SEM. (F) Representative EEG trace of a stage 5 Racine scale seizure recorded from a sham control Scn8aW/+-EMX1 mouse (green). Mouse succumbed to seizure-induced death immediately following the seizure. Bottom trace, (black) shows example trace of EEG activity from a Scn8aW/+-EMX1 SCN8A-ABE–treated mouse. (G) Severity of seizures recorded from Scn8aW/+-EMX1 SCN8A-ABE–treated mice (n = 3 mice, n = 23 seizures) compared with Scn8aW/+-EMX1 sham control mice (n = 9 mice, n = 416 seizures). Numbers represent Racine scale seizure classification. (H) Percentage of T-to-C conversion of the mutant R1872W allele in Scn8a W/+-EMX1 SCN8A-ABE–treated mice (n = 10) assessed for seizure activity at varying time points. Numbers shown correlate T-to-C conversion with effects on seizure incidence for mice shown in D. Asterisks indicate mice that exhibited seizure activity in D.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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