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Spatial single-cell proteotyping reveals immunotherapy-resistant features within the complex tumor microenvironment of metastatic NSCLC
Kohsuke Isomoto, Koji Haratani, Takahiro Tsujikawa, Shuta Tomida, Yusuke Makutani, Masayuki Takeda, Kimio Yonesaka, Kaoru Tanaka, Tsutomu Iwasa, Kazuko Sakai, Kazuto Nishio, Akihiko Ito, Kazuhiko Nakagawa, Hidetoshi Hayashi
Kohsuke Isomoto, Koji Haratani, Takahiro Tsujikawa, Shuta Tomida, Yusuke Makutani, Masayuki Takeda, Kimio Yonesaka, Kaoru Tanaka, Tsutomu Iwasa, Kazuko Sakai, Kazuto Nishio, Akihiko Ito, Kazuhiko Nakagawa, Hidetoshi Hayashi
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Clinical Research and Public Health Clinical Research Immunology Oncology

Spatial single-cell proteotyping reveals immunotherapy-resistant features within the complex tumor microenvironment of metastatic NSCLC

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Abstract

BACKGROUND Immune checkpoint inhibitors (ICIs) targeting the programmed cell death 1 axis have revolutionized metastatic non–small cell lung cancer (mNSCLC) treatment. However, disease progression remains a concern, and the role of the complex tumor microenvironment (TME) in treatment failure is not fully understood.METHODS In this biomarker study involving 103 patients with mNSCLC, including 81 patients who received ICI treatment, we evaluated the association between heterogeneous immune cell subsets and ICI efficacy through single-cell spatial profiling of pretreatment tumor tissue, using a 29-marker multiplex IHC platform built for in-depth dissection of the TME.RESULTS Among various types of intratumoral lymphocytes, including Th1, Treg, and NK cells, only CD8+ T cells (tumor-infiltrating lymphocytes [TILs]) were associated with ICI efficacy. Computational tissue segmentation underscored the importance of direct physical interactions between CD8+ TILs and cancer cells for ICI efficacy. TIL phenotyping identified CD39/CD103/Ki-67 positivity as a hallmark of exhausted yet functional tumor-reactive CD8+ TILs. Immunosuppressive tumor-associated macrophages (TAMs) and cancer-associated fibroblasts were independent unfavorable adversaries. High CD73 expression on cancer cells was suggested to confer tolerance to ICI in EGFR/ALK-oncogene+ NSCLC, potentially through M2-TAM accumulation and aberrant angiogenesis.CONCLUSION Our study delineates the clinical relevance of heterogeneous immune cell subsets in ICI-treated mNSCLC, aiding the development of targeted therapeutic strategies.FUNDING Osaka Cancer Society, KANAE Foundation for the Promotion of Medical Science, SGH Foundation, and YOKOYAMA Foundation for Clinical Pharmacology.

Authors

Kohsuke Isomoto, Koji Haratani, Takahiro Tsujikawa, Shuta Tomida, Yusuke Makutani, Masayuki Takeda, Kimio Yonesaka, Kaoru Tanaka, Tsutomu Iwasa, Kazuko Sakai, Kazuto Nishio, Akihiko Ito, Kazuhiko Nakagawa, Hidetoshi Hayashi

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Figure 9

TME features of EGFR/ALK-oncogene+ NSCLC.

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TME features of EGFR/ALK-oncogene+ NSCLC.
(A) PD-L1 TPS compared between...
(A) PD-L1 TPS compared between EGFR/ALK-oncogene– tumors (N = 65) and EGFR/ALK-oncogene+ tumors (N = 22). Six EGFR/ALK-oncogene– cases and 10 EGFR/ALK-oncogene+ cases were excluded due to unavailable PD-L1 TPS data. (B and C) CD8+ T cell densities (B) and Trm-like CD8+ T cell densities (C) in TN compared between EGFR/ALK-oncogene– tumors (N = 71) and EGFR/ALK-oncogene+ tumors (N = 32). (D) Ki-67 positivity in Trm-like CD8+ T cells in TN compared between EGFR/ALK-oncogene– tumors (N = 64) and EGFR/ALK-oncogene+ tumors (N = 32). Seven EGFR/ALK-oncogene– cases were excluded because Trm-like CD8+ TILs were absent, precluding positivity calculation. (E and F) Treg densities (E) and PD-1+ Treg densities (F) in TN compared between EGFR/ALK-oncogene– tumors (N = 71) and EGFR/ALK-oncogene+ tumors (N = 32). (G) CD206+ TAM densities in TN and ISA compared between EGFR/ALK-oncogene– tumors (N = 65 for TN; N = 71 for ISA) and EGFR/ALK-oncogene+ tumors (N = 29 for TN; N = 31 for ISA). Cases were excluded if CD68+ TAMs were absent, precluding positivity calculation (6 cases in TN of EGFR/ALK-oncogene– tumors, 3 cases in TN of EGFR/ALK-oncogene+ tumors, and 1 case in ISA of EGFR/ALK-oncogene+ tumors). Data are presented in violin plots in B–G, with each dot representing 1 patient; tumors with EGFR-mutations are colored red, and those with ALK-fusions are colored green. P values were determined by Fisher’s exact test in A and Mann-Whitney U test in B–G.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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