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Reversing enhancer RNA–mediated IKBKE gene repression enables synthetic anticancer immunity in prostate cancer models
Xiang Li, Rui Sun, Hao Li, Jacob J. Orme, Xu Zhang, Yu Hou, Sean S. Park, Yu Zhang, Yi He, Liguo Wang, Veronica Rodriguez-Bravo, Josep Domingo-Domenech, Shancheng Ren, Dan Xia, Guanghou Fu, Zhankui Jia, Haojie Huang
Xiang Li, Rui Sun, Hao Li, Jacob J. Orme, Xu Zhang, Yu Hou, Sean S. Park, Yu Zhang, Yi He, Liguo Wang, Veronica Rodriguez-Bravo, Josep Domingo-Domenech, Shancheng Ren, Dan Xia, Guanghou Fu, Zhankui Jia, Haojie Huang
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Research Article Immunology Oncology

Reversing enhancer RNA–mediated IKBKE gene repression enables synthetic anticancer immunity in prostate cancer models

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Abstract

Immunotherapy has been effective in many cancer types but has failed in multiple clinical trials in prostate cancers, with the underlying mechanisms remaining largely unclear. Here, we demonstrate that androgen receptor pathway inhibitor (ARPI) plus irradiation (IR) triggered robust anticancer immunity in prostate cancers in both patients and mice. We show that androgen-activated AR suppressed innate immune signaling by inducing inhibitor of nuclear factor kappa-B kinase subunit epsilon (IKBKE) gene repression through HDAC2 interaction with an IKBKE enhancer RNA (IKBKE eRNA, or IKBKE-e). ARPI treatment caused IKBKE derepression and enhanced an IR-induced innate immune response via action of RIG-I and MDA5 dsRNA sensors. IKBKE-e ablation largely enhanced innate immunity in prostate cancer cells in culture and anticancer immunity in mice. Our results revealed AR, HDAC2, and IKBKE eRNA as critical intrinsic immune suppressors in prostate cancer cells, suggesting that rejuvenating inhibitor of nuclear factor kappa-B kinase subunit epsilon (IKKε) signaling by targeting IKBKE-e is an actionable strategy to elicit synthetic anticancer immunity in immunologically “cold” cancers such as prostate cancer.

Authors

Xiang Li, Rui Sun, Hao Li, Jacob J. Orme, Xu Zhang, Yu Hou, Sean S. Park, Yu Zhang, Yi He, Liguo Wang, Veronica Rodriguez-Bravo, Josep Domingo-Domenech, Shancheng Ren, Dan Xia, Guanghou Fu, Zhankui Jia, Haojie Huang

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Figure 1

Dual IR and antiandrogen therapy activates the immune response and predicts better outcomes for patients with prostate cancer.

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Dual IR and antiandrogen therapy activates the immune response and predi...
(A–D) Patients’ OS (HR, 0.44 [95% CI: 0.18–1.1]) (A), distant PFS (HR, 0.60 [95% CI: 0.34–1.04]) (B), local PFS (HR, 0.54 [95% CI: 0.2–1.45]) (C), and biochemical PFS (HR, 0.67 [95% CI: 0.36–1.23]) (D) were analyzed using the data on 84 patients from the Mayo Clinic who had undergone radiotherapy. Significance in A–D determined by log-rank test.(E and F) scRNA-Seq analysis of PBMCs from 10 patients at D0 and D14 after treatment. (E) Uniform manifold approximation and projection (UMAP) plot of the cell populations. (F) Dot plot showing the expression of canonical markers of each cell type. (G–J) Cell ratios of CD8+ T cells (G), DCs (H), CD16+ monocytes (I), and NK cells (J) in samples from patients with prostate cancer. (K and L) mIHC analysis of immune cells infiltrated into prostate cancer patient tissues before and after a 3-month treatment with ADT/IR (K), with quantitative analysis (L). Scale bars: 100 μm. Data are displayed as the mean ± SEM in L. Significance in L was determined by 2-tailed t test.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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