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Genetic inactivation of FAAP100 causes Fanconi anemia due to disruption of the monoubiquitin ligase core complex
Julia Kuehl, … , Yanbin Zhang, Detlev Schindler
Julia Kuehl, … , Yanbin Zhang, Detlev Schindler
Published April 15, 2025
Citation Information: J Clin Invest. 2025;135(11):e187323. https://doi.org/10.1172/JCI187323.
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Research Article Cell biology Genetics

Genetic inactivation of FAAP100 causes Fanconi anemia due to disruption of the monoubiquitin ligase core complex

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Abstract

The Fanconi anemia/breast cancer (FA/BRCA) DNA repair network promotes the removal of DNA interstrand crosslinks (ICLs) to counteract their devastating consequences, including oncogenesis. Network signaling is initiated by the FA core complex, which consists of 7 authentic FA proteins and an FA-associated protein, FAAP100, with incompletely characterized roles and unknown disease associations. Upon activation, the FA core complex functions as a multiprotein E3 ubiquitin ligase centered on its catalytic module, the FANCB-FANCL-FAAP100 (BLP100) subcomplex, for FANCD2 and FANCI monoubiquitylation. Here, we identified a homozygous variant in FAAP100, c.1642A>C, predicting p.(T542P), in a fetus with malformations suggestive of FA. The mutation caused sensitivity to ICL-inducing agents in cells from the affected individual and genetically engineered, FAAP100-inactivated human, avian, zebrafish, and mouse cells. All FAAP100-deficient cell types were rescued by ectopic expression of WT FAAP100, but not FAAP100T542P. In a confirmatory animal model, customized Faap100–/– mice exhibited embryonic lethality, microsomia, malformations, and gonadal atrophy resembling mice with established FA subtypes. Mechanistically, FAAP100T542P impaired ligase activity by preventing BLP100 subcomplex formation, resulting in defective FAAP100T542P nuclear translocation and chromatin recruitment. FAAP100 dysfunction that disrupted the FA pathway and impaired genomic maintenance, together with FA-consistent human manifestations, recommends FAAP100 as a legitimate FA gene, alias FANCX.

Authors

Julia Kuehl, Yutong Xue, Fenghua Yuan, Ramanagouda Ramanagoudr-Bhojappa, Simone Pickel, Reinhard Kalb, Settara C. Chandrasekharappa, Weidong Wang, Yanbin Zhang, Detlev Schindler

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Figure 4

Cellular FA phenotype of faap100-KO zebrafish.

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Cellular FA phenotype of faap100-KO zebrafish.
(A) Schematic of the CRIS...
(A) Schematic of the CRISPR/Cas9-mediated faap100 gene–KO (si:dkey-57h18.1). (B) Growth curves show slower proliferation of primary cell cultures from faap100–/– fish (circles) than from faap100+/+ fish (squares). The mean ± SD for multiples of the initial cell number of 3 independent subcultures is shown for each time point, with day 0 counts set to 1. ***P < 0.001 (t test) at day 4. Data were exponentially fitted. (C) Metaphase micrographs after exposure of faap100+/+ or faap100–/– cell cultures to MMC (2.5 ng/mL, 24 hours). faap100–/– cells showed markedly increased chromosome breakage, mostly of the chromatid type. Red arrows indicate radials and black arrows other types of breakage. Original magnification, ×1,000. (D) Box plots reflect the proportion of faap100+/+ (top) or faap100–/– (bottom) cells with the indicated number of chromosome breaks per metaphase. Single value (♦), median (─), mean (□), IQR (─), minimum (x), and maximum (x) for the number of breaks from 2 independent experiments; blue symbols represent data from untreated cultures, and red symbols represent data from cultures exposed to MMC (2.5 ng/mL, 24 hours). Light gray shading indicates high rates of 8 or more breaks per metaphase, and the red arrow highlights a pivotal rate of 10 or higher. A total of 31–53 metaphases were analyzed per experiment. (E) Flow cytometric cell-cycle analysis of faap100+/+ (top) and faap100–/– (bottom) cell cultures without MMC (– MMC) or after exposure to MMC (+ MMC) (5 ng/mL, 48 hours). Exemplary individual measurements are shown. The percentages of cells in G2 are shown. Red coloring and arrow indicate an increased G2 compartment size. (F) Dose-response (survival) curves of faap100+/+ (top) and faap100–/– (bottom) cells from cultures exposed to different concentrations of MMC. The mean ± SD of triplicates is shown. (G) Homozygous KO of faap100 resulted in complete sex reversal from female to male. The numbers above the bars represent the number of fish in each sex and genotype category.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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