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CDKL3 is a targetable regulator of cell cycle progression in cancers
Haijiao Zhang, Jiahui Lin, Shaoqin Zheng, Lanjing Ma, Zhongqiu Pang, Hongyi Yin, Chengcheng Meng, Yinuo Wang, Qing Han, Xi Zhang, Zexu Li, Liu Cao, Lijun Liu, Teng Fei, Daming Gao, Liang Yang, Xueqiang Peng, Chen Ding, Shixue Wang, Ren Sheng
Haijiao Zhang, Jiahui Lin, Shaoqin Zheng, Lanjing Ma, Zhongqiu Pang, Hongyi Yin, Chengcheng Meng, Yinuo Wang, Qing Han, Xi Zhang, Zexu Li, Liu Cao, Lijun Liu, Teng Fei, Daming Gao, Liang Yang, Xueqiang Peng, Chen Ding, Shixue Wang, Ren Sheng
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Research Article Cell biology

CDKL3 is a targetable regulator of cell cycle progression in cancers

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Abstract

Cell cycle regulation is largely abnormal in cancers. Molecular understanding and therapeutic targeting of the aberrant cell cycle are essential. Here, we identified that an underappreciated serine/threonine kinase, cyclin-dependent kinase–like 3 (CDKL3), crucially drives rapid cell cycle progression and cell growth in cancers. With regard to mechanism, CDKL3 localizes in the nucleus and associates with specific cyclin to directly phosphorylate retinoblastoma (Rb) for quiescence exit. In parallel, CDKL3 prevents the ubiquitin-proteasomal degradation of cyclin-dependent kinase 4 (CDK4) by direct phosphorylation on T172 to sustain G1 phase advancement. The crucial function of CDKL3 in cancers was demonstrated both in vitro and in vivo. We also designed, synthesized, and characterized a first-in-class CDKL3-specific inhibitor, HZ1. HZ1 exhibits greater potency than CDK4/6 inhibitor in pan-cancer treatment by causing cell cycle arrest and overcomes acquired resistance to CDK4/6 inhibitor. In particular, CDKL3 has significant clinical relevance in colon cancer, and the effectiveness of HZ1 was demonstrated by murine and patient-derived cancer models. Collectively, this work presents an integrated paradigm of cancer cell cycle regulation and suggests CDKL3 targeting as a feasible approach in cancer treatment.

Authors

Haijiao Zhang, Jiahui Lin, Shaoqin Zheng, Lanjing Ma, Zhongqiu Pang, Hongyi Yin, Chengcheng Meng, Yinuo Wang, Qing Han, Xi Zhang, Zexu Li, Liu Cao, Lijun Liu, Teng Fei, Daming Gao, Liang Yang, Xueqiang Peng, Chen Ding, Shixue Wang, Ren Sheng

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Figure 5

Phosphorylation on T172 prevents the ubiquitin-proteasomal degradation of CDK4 and secures the function of CDK4.

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Phosphorylation on T172 prevents the ubiquitin-proteasomal degradation o...
(A) Ubiquitination assay of CDK4 WT, T172A, and T172E in CDK4-knockout and -rescued HEK293T cells. Ubiquitination was enhanced for T172A and reduced for T172E. MG132 pretreatment was performed to maintain the same protein level. The rescue of CDK4 WT, T172A, and T172E was approximately at the same level as the endogenous CDK4. (B) Immunoblotting assay showing that MG132 treatment stabilizes CDK4 T172A in CDK4-knockout and -rescued HEK293T cells. CDK4 T172E was insensitive to MG132 treatment. (C) CHX-blocking assay showing that CDK4 T172E had high protein stability whereas T172A had low protein stability in CDK4-knockout and -rescued DLD-1 cells. (D) CHX-blocking assay showing that CDK4 T172E remained stable when CDKL3 was ablated. The stability of T172A was unaffected by the presence of CDKL3. (E) Immunoblotting assay showing that CDK4 T172A failed to promote a high level of Rb phosphorylation after serum starvation and release in CDK4-knockout and -rescued DLD-1 cells. (F) Statistical analysis of the flow cytometry results showing that CDK4 T172A failed to promote G1 phase progression. Error bars indicate ± SD, n = 3, by 1-way ANOVA. (G and H) CHX-blocking assay showing that the stabilization of CDK4 by CDKL3 was dependent on cyclin A2 (G) instead of cyclin D (H). (I and J) Quantitative analyses of the tumor volume (I) and weight (J) of tumors formed by the subcutaneously transplanted DLD-1 cells. (I) Error bars indicate ± SD, n = 10, by 2-way ANOVA. (J) Error bars indicate ± SD, n = 10, by 1-way ANOVA. (K) Representative IHC staining and H&E staining images of subcutaneously transplanted DLD-1 cells. *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001. All CHX-blocking assays were analyzed by 1-way ANOVA.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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