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BET bromodomain inhibition potentiates radiosensitivity in models of H3K27-altered diffuse midline glioma
Jun Watanabe, Matthew R. Clutter, Michael J. Gullette, Takahiro Sasaki, Eita Uchida, Savneet Kaur, Yan Mo, Kouki Abe, Yukitomo Ishi, Nozomu Takata, Manabu Natsumeda, Samantha Gadd, Zhiguo Zhang, Oren J. Becher, Rintaro Hashizume
Jun Watanabe, Matthew R. Clutter, Michael J. Gullette, Takahiro Sasaki, Eita Uchida, Savneet Kaur, Yan Mo, Kouki Abe, Yukitomo Ishi, Nozomu Takata, Manabu Natsumeda, Samantha Gadd, Zhiguo Zhang, Oren J. Becher, Rintaro Hashizume
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Research Article Oncology

BET bromodomain inhibition potentiates radiosensitivity in models of H3K27-altered diffuse midline glioma

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Abstract

Diffuse midline glioma (DMG) H3K27-altered is one of the most malignant childhood cancers. Radiation therapy remains the only effective treatment yet provides a 5-year survival rate of only 1%. Several clinical trials have attempted to enhance radiation antitumor activity using radiosensitizing agents, although none have been successful. Given this, there is a critical need for identifying effective therapeutics to enhance radiation sensitivity for the treatment of DMG. Using high-throughput radiosensitivity screening, we identified bromo- and extraterminal domain (BET) protein inhibitors as potent radiosensitizers in DMG cells. Genetic and pharmacologic inhibition of BET bromodomain activity reduced DMG cell proliferation and enhanced radiation-induced DNA damage by inhibiting DNA repair pathways. RNA-Seq and the CUT&RUN (cleavage under targets and release using nuclease) analysis showed that BET bromodomain inhibitors regulated the expression of DNA repair genes mediated by H3K27 acetylation at enhancers. BET bromodomain inhibitors enhanced DMG radiation response in patient-derived xenografts as well as genetically engineered mouse models. Together, our results highlight BET bromodomain inhibitors as potential radiosensitizer and provide a rationale for developing combination therapy with radiation for the treatment of DMG.

Authors

Jun Watanabe, Matthew R. Clutter, Michael J. Gullette, Takahiro Sasaki, Eita Uchida, Savneet Kaur, Yan Mo, Kouki Abe, Yukitomo Ishi, Nozomu Takata, Manabu Natsumeda, Samantha Gadd, Zhiguo Zhang, Oren J. Becher, Rintaro Hashizume

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Figure 2

BRD4 depletion suppressed cell growth in DMG cells.

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BRD4 depletion suppressed cell growth in DMG cells.
(A) Western blotting...
(A) Western blotting results showing sgRNA-mediated depletion of BRD4 expression (sgBRD4-1, -2, -3) in SF8628 and DIPG007 cells. (B) Cell growth plot showing antiproliferative effects of sgBRD4-1, -2, and -3 in SF8628 and DIPG007 cells. The plot represents the absorbance (OD, λ = 490 nm) quantified each day (left). Values shown are the average (mean ± SEM) from triplicate samples for each condition as day 1 normalized. Dot plot representation of OD490 values on day 5 (right). Statistical analysis was performed using 1-way ANOVA comparisons: SF8628, sgBRD4-1, ***P = 0.0001; sgBRD4-2, ***P = 0.0002; sgBRD4-3, ****P < 0.0001; DIPG007, sgBRD4-1, *P = 0.0261; sgBRD4-2, *P = 0.0113; sgBRD4-3, **P = 0.0033. n = 3 (C) Effect of BRD4 depletion in colony formation. Bar graphs: Representation of colony numbers in DMG cells. Values shown are the average (mean ± SEM) from triplicate samples for each condition. One-way ANOVA comparisons between the control and BRD4 depletion groups, ****P < 0.0001; sgBRD4-2, ***P = 0.0004. (D) Effects of BRD4 depletion in BrdU incorporation assay. Cells were pulsed with 10μM BrdU for 1 hour and treated with Alexa Fluor 488–BrdU antibody and 7-aminoactinomycin D (7-AAD). Bar graphs represent BrdU-positive cell numbers. Values shown are the average (mean ± SEM) from duplicate samples for each incubation condition. S-phase cell populations were analyzed with 1-way ANOVA comparisons of each BRD4 sgRNA, ****P < 0.0001; SF8628: sgBRD4-1, **P = 0.0017; sgBRD4-2, **P = 0.0050; sgRNA3 **P = 0.0072; DIPG007: sgBRD4-1, ***P = 0.0001.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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