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The catalytic subunit of DNA-PK regulates transcription and splicing of AR in advanced prostate cancer
Beth Adamson, Nicholas Brittain, Laura Walker, Ruaridh Duncan, Sara Luzzi, Pasquale Rescigno, Graham Smith, Suzanne McGill, Richard J.S. Burchmore, Elaine Willmore, Ian Hickson, Craig N. Robson, Denisa Bogdan, Juan M. Jimenez-Vacas, Alec Paschalis, Jonathan Welti, Wei Yuan, Stuart R. McCracken, Rakesh Heer, Adam Sharp, Johann S. de Bono, Luke Gaughan
Beth Adamson, Nicholas Brittain, Laura Walker, Ruaridh Duncan, Sara Luzzi, Pasquale Rescigno, Graham Smith, Suzanne McGill, Richard J.S. Burchmore, Elaine Willmore, Ian Hickson, Craig N. Robson, Denisa Bogdan, Juan M. Jimenez-Vacas, Alec Paschalis, Jonathan Welti, Wei Yuan, Stuart R. McCracken, Rakesh Heer, Adam Sharp, Johann S. de Bono, Luke Gaughan
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Research Article Endocrinology Oncology

The catalytic subunit of DNA-PK regulates transcription and splicing of AR in advanced prostate cancer

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Abstract

Aberrant androgen receptor (AR) signaling drives prostate cancer (PC), and it is a key therapeutic target. Although initially effective, the generation of alternatively spliced AR variants (AR-Vs) compromises efficacy of treatments. In contrast to full-length AR (AR-FL), AR-Vs constitutively activate androgenic signaling and are refractory to the current repertoire of AR-targeting therapies, which together drive disease progression. There is an unmet clinical need, therefore, to develop more durable PC therapies that can attenuate AR-V function. Exploiting the requirement of coregulatory proteins for AR-V function has the capacity to furnish tractable routes for attenuating persistent oncogenic AR signaling in advanced PC. DNA-PKcs regulates AR-FL transcriptional activity and is upregulated in both early and advanced PC. We hypothesized that DNA-PKcs is critical for AR-V function. Using a proximity biotinylation approach, we demonstrated that the DNA-PK holoenzyme is part of the AR-V7 interactome and is a key regulator of AR-V–mediated transcription and cell growth in models of advanced PC. Crucially, we provide evidence that DNA-PKcs controls global splicing and, via RBMX, regulates the maturation of AR-V and AR-FL transcripts. Ultimately, our data indicate that targeting DNA-PKcs attenuates AR-V signaling and provide evidence that DNA-PKcs blockade is an effective therapeutic option in advanced AR-V–positive patients with PC.

Authors

Beth Adamson, Nicholas Brittain, Laura Walker, Ruaridh Duncan, Sara Luzzi, Pasquale Rescigno, Graham Smith, Suzanne McGill, Richard J.S. Burchmore, Elaine Willmore, Ian Hickson, Craig N. Robson, Denisa Bogdan, Juan M. Jimenez-Vacas, Alec Paschalis, Jonathan Welti, Wei Yuan, Stuart R. McCracken, Rakesh Heer, Adam Sharp, Johann S. de Bono, Luke Gaughan

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Figure 4

DNA-PKcs blockade and knockdown markedly affects the AR-V transcriptome.

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DNA-PKcs blockade and knockdown markedly affects the AR-V transcriptome....
(A) MA plot (log fold change [M] versus mean of normalised counts [A]) showing the number of up- and downregulated genes in response to DNA-PKcs knockdown and inhibition with NU5455 (blue represents statistically significant differentially expressed genes [DEGs], P adjusted < 0.05). (B) Venn diagram indicating the percentage overlap of DEGs (P < 0.05, fold change ± 1.5) between DNA-PKcs depletion (siDNA-PKcs) and inhibition (NU5455). (C) Heatmap of overlapping DEGs between DNA-PKcs knockdown and inhibition compared with control. (D) Unfiltered DEG lists from NU5455 and siDNA-PKcs treatment were compared with the “androgen response hallmark” gene lists using GSEA. Venn diagrams show the percentage overlap between AR-V transcriptome (Kounatidou et al., ref. 16) and DNA-PKcs knockdown or inhibition DEGs. (E) VCaP cells were treated for 24 hours with 1 μM NU5455 with and without DHT before RT-qPCR analysis. Data represent the mean of 3 repeats ± SEM. An unpaired 2-tailed t test was used to determine the statistical significance. *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001. (F) Cells were transfected with oligonucleotides targeting DNA-PKcs or a scrambled (siScr) control for 72 hours prior to RT-QPCR, as in E. (G) AR immunoblotting of VCaP and CWR22Rv1-AR-EK cells grown in increasing doses of NU7441 or vehicle control (NT) for 24 hours. (H and I) Association of DNA-PKcs (PRKDC) mRNA levels with (H) AR and AR-V7 mRNA levels and (I) AR and AR-V7 activity scores in SU2C/PCF (n = 159) CRPC transcriptomes. r and P values were calculated using Spearman’s correlation. (J) VCaP cells grown in steroid-depleted media were transfected with DNA-PKcs–targeting (siDNA-PKcs) or control scrambled siRNA (siScr) for 72 hours prior ChIP using AR or isotype control (IgG) antibodies. Data shown represent the normalized fold enrichment to siScr control and are the mean of 3 independent repeats.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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