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Human pluripotent stem cell modeling of alveolar type 2 cell dysfunction caused by ABCA3 mutations
Yuliang L. Sun, … , Jennifer A. Wambach, Darrell N. Kotton
Yuliang L. Sun, … , Jennifer A. Wambach, Darrell N. Kotton
Published January 16, 2024
Citation Information: J Clin Invest. 2024;134(2):e164274. https://doi.org/10.1172/JCI164274.
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Research Article Cell biology

Human pluripotent stem cell modeling of alveolar type 2 cell dysfunction caused by ABCA3 mutations

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Abstract

Mutations in ATP-binding cassette A3 (ABCA3), a phospholipid transporter critical for surfactant homeostasis in pulmonary alveolar type II epithelial cells (AEC2s), are the most common genetic causes of childhood interstitial lung disease (chILD). Treatments for patients with pathological variants of ABCA3 mutations are limited, in part due to a lack of understanding of disease pathogenesis resulting from an inability to access primary AEC2s from affected children. Here, we report the generation of AEC2s from affected patient induced pluripotent stem cells (iPSCs) carrying homozygous versions of multiple ABCA3 mutations. We generated syngeneic CRISPR/Cas9 gene-corrected and uncorrected iPSCs and ABCA3-mutant knockin ABCA3:GFP fusion reporter lines for in vitro disease modeling. We observed an expected decreased capacity for surfactant secretion in ABCA3-mutant iPSC-derived AEC2s (iAEC2s), but we also found an unexpected epithelial-intrinsic aberrant phenotype in mutant iAEC2s, presenting as diminished progenitor potential, increased NFκB signaling, and the production of pro-inflammatory cytokines. The ABCA3:GFP fusion reporter permitted mutant-specific, quantifiable characterization of lamellar body size and ABCA3 protein trafficking, functional features that are perturbed depending on ABCA3 mutation type. Our disease model provides a platform for understanding ABCA3 mutation–mediated mechanisms of alveolar epithelial cell dysfunction that may trigger chILD pathogenesis.

Authors

Yuliang L. Sun, Erin E. Hennessey, Hillary Heins, Ping Yang, Carlos Villacorta-Martin, Julian Kwan, Krithi Gopalan, Marianne James, Andrew Emili, F. Sessions Cole, Jennifer A. Wambach, Darrell N. Kotton

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Figure 3

ABCA3 protein mistrafficking/misprocessing and reduced lamellar body size results from subtypes of ABCA3 mutations in human iAEC2s.

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ABCA3 protein mistrafficking/misprocessing and reduced lamellar body siz...
(A) Biallelic editing of the endogenous ABCA3 locus to engineer an ABCA3:GFP fusion reporter in the BU3ABCA3:GFP iPSC line. Three new separate syngeneic mutant iPSC lines were then generated by biallelic editing of the parent line at locations indicated by each * corresponding to either L101P, E690K, or W308R ABCA3 missense mutations. (B) Flow cytometry of day 43 to 44 cells after distal lung differentiation of indicated lines, quantifying expression of indicated ABCA3:GFP (AG) proteins. (B and C) GFP+ cell percentages; (D) mean fluorescence intensity (MFI of GFP positive/GFP negative cells). Bars represent mean ± SE (n = 3 replicates separated at day 0). (E) Confocal microscopy of iAEC2s expressing either WT or each indicated mutant ABCA3:GFP (AG) fusion protein (green). Nuclei (blue). Scale bars: 10 μm. Magnification of WT-AG (orange box) alongside a cartoon showing nucleus (N) and intracellular vesicles outlined by ABCA3:GFP (right). NB: the L101P-AG panel shows diffuse cytoplasmic GFP appearance (protein mistrafficking); there is no reproducible cell morphology change resulting from L101P-AG. (F) Diameter of GFP+ intracellular vesicles in indicated iAEC2s. n = 50 vesicles per genotype in 8–10 cells/genotype. Graph shows mean ± SE. *P ≤ 0.05, ****P ≤ 0.0001 by 1-way ANOVA with Tukey’s multiple comparisons test for panels C, D, and F. (G) Western blot immunostained for GFP (or housekeeping protein, β-actin) to assess processing of the 220 kDa to 180 kDa ABCA3:GFP fusion protein and its cleavage product. Syngeneic iAEC2s were generated from either WT BU3ABCA3:GFP iPSCs or the indicated mutant lines. (H) Ratios of 180 kDa to 220 kDa ABCA3 cleavage from G. Graph shows mean ± SE. *P ≤ 0.05 by unpaired, 1-tailed Student’s t test (n = 3).

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ISSN: 0021-9738 (print), 1558-8238 (online)

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