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Human pluripotent stem cell modeling of alveolar type 2 cell dysfunction caused by ABCA3 mutations
Yuliang L. Sun, … , Jennifer A. Wambach, Darrell N. Kotton
Yuliang L. Sun, … , Jennifer A. Wambach, Darrell N. Kotton
Published January 16, 2024
Citation Information: J Clin Invest. 2024;134(2):e164274. https://doi.org/10.1172/JCI164274.
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Research Article Cell biology

Human pluripotent stem cell modeling of alveolar type 2 cell dysfunction caused by ABCA3 mutations

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Abstract

Mutations in ATP-binding cassette A3 (ABCA3), a phospholipid transporter critical for surfactant homeostasis in pulmonary alveolar type II epithelial cells (AEC2s), are the most common genetic causes of childhood interstitial lung disease (chILD). Treatments for patients with pathological variants of ABCA3 mutations are limited, in part due to a lack of understanding of disease pathogenesis resulting from an inability to access primary AEC2s from affected children. Here, we report the generation of AEC2s from affected patient induced pluripotent stem cells (iPSCs) carrying homozygous versions of multiple ABCA3 mutations. We generated syngeneic CRISPR/Cas9 gene-corrected and uncorrected iPSCs and ABCA3-mutant knockin ABCA3:GFP fusion reporter lines for in vitro disease modeling. We observed an expected decreased capacity for surfactant secretion in ABCA3-mutant iPSC-derived AEC2s (iAEC2s), but we also found an unexpected epithelial-intrinsic aberrant phenotype in mutant iAEC2s, presenting as diminished progenitor potential, increased NFκB signaling, and the production of pro-inflammatory cytokines. The ABCA3:GFP fusion reporter permitted mutant-specific, quantifiable characterization of lamellar body size and ABCA3 protein trafficking, functional features that are perturbed depending on ABCA3 mutation type. Our disease model provides a platform for understanding ABCA3 mutation–mediated mechanisms of alveolar epithelial cell dysfunction that may trigger chILD pathogenesis.

Authors

Yuliang L. Sun, Erin E. Hennessey, Hillary Heins, Ping Yang, Carlos Villacorta-Martin, Julian Kwan, Krithi Gopalan, Marianne James, Andrew Emili, F. Sessions Cole, Jennifer A. Wambach, Darrell N. Kotton

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Figure 2

Measurement of secreted surfactant phospholipids in 2D cultures of iAEC2s quantifies surfactant secretion defects resulting from ABCA3 mutations.

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Measurement of secreted surfactant phospholipids in 2D cultures of iAEC2...
(A) Gene editing generates an ABCA3:GFP fusion reporter as previously published in Sun et al., 2021 (39). *, stop codon. (B) Fluorescence microscopy of live iAEC2s in 3D (Scale bar, 50 μm) versus 2D mono-layered cultures (Scale bar, 10 μm). (C) Time course of BU3ABCA3:GFP iPSC differentiation for (D), n = 3 replicates separated at day 0. (D) Flow cytometry of ABCA3:GFP expression in day 32 outgrowths of BU3ABCA3:GFP cells enriched for NKX2-1 by CD47hi/CD26lo sort on day 15 and grown in 3D or 2D mono-layered cultures, versus negative control (–ctrl; cells depleted in NKX2-1 by sorting on day 15 and then grown in 3D culture). Graph shows mean ± SE, **P ≤ 0.01 by 1-way ANOVA with Tukey’s multiple comparisons test. (E) Gene expression (qRT-PCR; 18S normalized fold change in expression compared with iPSCs; 2–ΔΔCt ± SE). n = 3 replicates separated on day 0. (F) Representative live-cell confocal image of day 75 BU3ABCA3:GFP cells in 2D monolayer culture (left) and after 15 minutes of secretagogue (ATP, PMA) treatment, showing release of surfactant lipids visualized by the FM4-64 lipophilic dye (red). Scale bars: 10 μm. (G) 3D rendered z-stack of F, 20 minutes after secretagogue treatment shows apical dye released from exocytosing LBs visualized by ABCA3:GFP (green). Scale: 10 μm per tick (left). Brightfield (BF) overlay of surfactant lipid secretion (red) in 2D culture after secretagogue treatment (right). (H) Experimental plan for harvesting apical supernatants of 2D cultured patient and gene-corrected syngeneic iAEC2s. (I) Levels of total PC species and surfactant specific dipalmitoyl PC (DPPC, PC32:0) in the culture supernatants of indicated patient iAEC2s. Graphs show mean ± SE, n = 3 biological replicates; *P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.001, ****P ≤ 0.0001 by 1-way ANOVA with Tukey’s multiple comparisons test in panels E and I.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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