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Net39 protects muscle nuclei from mechanical stress during the pathogenesis of Emery-Dreifuss muscular dystrophy
Yichi Zhang, … , Ning Liu, Eric N. Olson
Yichi Zhang, … , Ning Liu, Eric N. Olson
Published July 3, 2023
Citation Information: J Clin Invest. 2023;133(13):e163333. https://doi.org/10.1172/JCI163333.
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Research Article Muscle biology

Net39 protects muscle nuclei from mechanical stress during the pathogenesis of Emery-Dreifuss muscular dystrophy

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Abstract

Mutations in genes encoding nuclear envelope proteins lead to diseases known as nuclear envelopathies, characterized by skeletal muscle and heart abnormalities, such as Emery-Dreifuss muscular dystrophy (EDMD). The tissue-specific role of the nuclear envelope in the etiology of these diseases has not been extensively explored. We previously showed that global deletion of the muscle-specific nuclear envelope protein NET39 in mice leads to neonatal lethality due to skeletal muscle dysfunction. To study the potential role of the Net39 gene in adulthood, we generated a muscle-specific conditional knockout (cKO) of Net39 in mice. cKO mice recapitulated key skeletal muscle features of EDMD, including muscle wasting, impaired muscle contractility, abnormal myonuclear morphology, and DNA damage. The loss of Net39 rendered myoblasts hypersensitive to mechanical stretch, resulting in stretch-induced DNA damage. Net39 was downregulated in a mouse model of congenital myopathy, and restoration of Net39 expression through AAV gene delivery extended life span and ameliorated muscle abnormalities. These findings establish NET39 as a direct contributor to the pathogenesis of EDMD that acts by protecting against mechanical stress and DNA damage.

Authors

Yichi Zhang, Andres Ramirez-Martinez, Kenian Chen, John R. McAnally, Chunyu Cai, Mateusz Z. Durbacz, Francesco Chemello, Zhaoning Wang, Lin Xu, Rhonda Bassel-Duby, Ning Liu, Eric N. Olson

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Figure 5

Transcriptomic analysis of cKO muscles reveals a pathologic myonuclear population.

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Transcriptomic analysis of cKO muscles reveals a pathologic myonuclear p...
(A) Volcano plot illustrating the up- and downregulated genes in cKO GP compared with Ctrl GP muscles at 5 months of age by bulk RNA-Seq. A cut-off of fold change greater than 2 and an adjusted P value of less than 0.05 was set for the identification of differentially expressed genes. (B) Gene Ontology (GO) Pathway analysis of the up- (red) and downregulated (blue) genes in cKO muscle relative to Ctrl at 5 months of age by bulk RNA-Seq. (C) mRNA expression of DNA damage–induced genes in Ctrl and cKO GP muscle at 5 months of age detected by RNA-Seq. *P < 0.05; ***P < 0.001. Unpaired, 2-tailed Student’s t test. n = 3 mice. Data are represented as mean ± SEM. (D) UMAP visualization of nuclear transcriptomes from Ctrl and cKO GP muscles at 5 months of age by snRNA-Seq (7,296 nuclei) colored by cluster identity. SMC, smooth muscle cells; rem, remodeling myonuclei; EC, endothelial cells; NMJ, neuromuscular junction; MTJ, myotendinous junction; MSC, mesenchymal stem cells; Sat, satellite cells; IIx, type IIx myonuclei; IIa, type IIa myonuclei; IIb, type IIb myonuclei; I, type I myonuclei; immune, immune cells. (E) UMAP visualization of Ctrl (3,566 nuclei) (left) and cKO (3,730 nuclei) (right) nuclear transcriptomes by snRNA-Seq. Type I myonuclei are enclosed in red dashed lines. (F) Distribution plot showing the percentage of nuclei corresponding to the indicated populations in Ctrl (black) and cKO (red) samples. (G) Heatmaps showing the expression of the top 30 up- and downregulated genes by bulk RNA-Seq (right) and their expression in different nuclear populations by snRNA-Seq (left) in Ctrl and cKO GP muscles at 5 months of age. Color indicates z score. (H) Violin plots showing the expression of Trp63 and Atf3 in Ctrl (cyan) and cKO (pink) type I myonuclei.

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