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HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy
William R. McManus, Michael J. Bale, Jonathan Spindler, Ann Wiegand, Andrew Musick, Sean C. Patro, Michele D. Sobolewski, Victoria K. Musick, Elizabeth M. Anderson, Joshua C. Cyktor, Elias K. Halvas, Wei Shao, Daria Wells, Xiaolin Wu, Brandon F. Keele, Jeffrey M. Milush, Rebecca Hoh, John W. Mellors, Stephen H. Hughes, Steven G. Deeks, John M. Coffin, Mary F. Kearney
William R. McManus, Michael J. Bale, Jonathan Spindler, Ann Wiegand, Andrew Musick, Sean C. Patro, Michele D. Sobolewski, Victoria K. Musick, Elizabeth M. Anderson, Joshua C. Cyktor, Elias K. Halvas, Wei Shao, Daria Wells, Xiaolin Wu, Brandon F. Keele, Jeffrey M. Milush, Rebecca Hoh, John W. Mellors, Stephen H. Hughes, Steven G. Deeks, John M. Coffin, Mary F. Kearney
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Research Article AIDS/HIV

HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy

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Abstract

To investigate the possibility that HIV-1 replication in lymph nodes sustains the reservoir during antiretroviral therapy (ART), we looked for evidence of viral replication in 5 donors after up to 13 years of viral suppression. We characterized proviral populations in lymph nodes and peripheral blood before and during ART, evaluated the levels of viral RNA expression in single lymph node and blood cells, and characterized the proviral integration sites in paired lymph node and blood samples. Proviruses with identical sequences, identical integration sites, and similar levels of RNA expression were found in lymph nodes and blood samples collected during ART, and no single sequence with significant divergence from the pretherapy population was detected in either blood or lymph nodes. These findings show that all detectable persistent HIV-1 infection is consistent with maintenance in lymph nodes by clonal proliferation of cells infected before ART and not by ongoing viral replication during ART.

Authors

William R. McManus, Michael J. Bale, Jonathan Spindler, Ann Wiegand, Andrew Musick, Sean C. Patro, Michele D. Sobolewski, Victoria K. Musick, Elizabeth M. Anderson, Joshua C. Cyktor, Elias K. Halvas, Wei Shao, Daria Wells, Xiaolin Wu, Brandon F. Keele, Jeffrey M. Milush, Rebecca Hoh, John W. Mellors, Stephen H. Hughes, Steven G. Deeks, John M. Coffin, Mary F. Kearney

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Figure 3

HIV-1 P6-PR-RT proviral DNA sequences from longitudinal lymph node samples.

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HIV-1 P6-PR-RT proviral DNA sequences from longitudinal lymph node sampl...
Neighbor joining trees were constructed from single-genome P6-PR-RT proviral sequences obtained from LNMC at 2 time points: the first prior to ART initiation or after 11.4 or 4.3 years on ART (dark blue triangles) and the second approximately 1 year later (light blue triangles). Diversity, divergence, and root-to-tip distances were measured as described in the legend to Figure 1. Black arrows indicate clonal sequences present at both time points, and red arrows indicate sequences matching virus that grew in the viral outgrowth assay. A is rooted on the HIV-1 subtype C consensus sequence, and B and C are rooted on the subtype B consensus sequence. Sequences containing G to A hypermutation and/or stop codons in open reading frames (indicated by shaded boxes) were excluded from all analyses. Results from a total of 6 samples (2 samples each from 3 patients) are represented in this figure.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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