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USP16-mediated deubiquitination of calcineurin A controls peripheral T cell maintenance
Yu Zhang, … , Yi-yuan Li, Jin Jin
Yu Zhang, … , Yi-yuan Li, Jin Jin
Published May 28, 2019
Citation Information: J Clin Invest. 2019;129(7):2856-2871. https://doi.org/10.1172/JCI123801.
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Research Article Cell biology Immunology

USP16-mediated deubiquitination of calcineurin A controls peripheral T cell maintenance

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Abstract

Calcineurin acts as a calcium-activated phosphatase that dephosphorylates various substrates, including members of the nuclear factor of activated T cells (NFAT) family, to trigger their nuclear translocation and transcriptional activity. However, the detailed mechanism regulating the recruitment of NFATs to calcineurin remains poorly understood. Here, we report that calcineurin A (CNA), encoded by PPP3CB or PPP3CC, is constitutively ubiquitinated on lysine 327, and this polyubiquitin chain is rapidly removed by ubiquitin carboxyl-terminal hydrolase 16 (USP16) in response to intracellular calcium stimulation. The K29-linked ubiquitination of CNA impairs NFAT recruitment and transcription of NFAT-targeted genes. USP16 deficiency prevents calcium-triggered deubiquitination of CNA in a manner consistent with defective maintenance and proliferation of peripheral T cells. T cell–specific USP16 knockout mice exhibit reduced severity of experimental autoimmune encephalitis and inflammatory bowel disease. Our data reveal the physiological function of CNA ubiquitination and its deubiquitinase USP16 in peripheral T cells. Notably, our results highlight a critical mechanism for the regulation of calcineurin activity and a novel immunosuppressive drug target for the treatment of autoimmune diseases.

Authors

Yu Zhang, Rong-bei Liu, Qian Cao, Ke-qi Fan, Ling-jie Huang, Jian-shuai Yu, Zheng-jun Gao, Tao Huang, Jiang-yan Zhong, Xin-tao Mao, Fei Wang, Peng Xiao, Yuan Zhao, Xin-hua Feng, Yi-yuan Li, Jin Jin

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Figure 4

USP16 regulates NFAT activation by controlling its recruitment to CNA.

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USP16 regulates NFAT activation by controlling its recruitment to CNA.
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(A and B) Recordings of Ca2+ flux in WT and USP16-deficient CD4+ T cells cultured in Ca2+-free medium, and stimulated by crosslinking biotinylated P/I (A) or αCD3/αCD28 (B) along with addition of 2 mM CaCl2. (C) IB analysis of the cytoplasmic and nuclear NFAT levels in WT and USP16-deficient CD4+ T cells activated by αCD3/αCD28. (D) qPCR analysis of Il2 and Ifng mRNA levels in WT or USP16-deficient CD4+ T cells in response to plate-coated αCD3/αCD28. The qRT-PCR data are presented as fold changes relative to the Actb mRNA level. (E) USP16-deficient CD4+ T cells were reconstituted with USP16-WT or USP16-CI using nucleofection. IB analysis of nuclear translocation of NFAT2 upon P/I stimulation. (F) The interaction between CNA and NFAT2 was assessed in WT and USP16-deficient T cells activated by αCD3/αCD28. WLs were subjected to IP using anti-CNA antibody or rabbit IgG control (NC), followed by IB analyses of the associated NFAT2. (G–H) EL4 T cells were infected with retrovirus carrying WT (3CB-W) or K327R mutant 3CB (3CB-M). GFP+ cells were sorted by FACS, and USP16 expression was silenced by lentiviruses carrying USP16-specific shRNAs. After puromycin selection, these EL4 cells were stimulated with αCD3/αCD28 as indicated. The nuclear translocation of NFAT2 was evaluated by direct IB analyses. The recruitment of NFAT2 to CNA was assessed in these reconstituted EL4 cells in response to αCD3/αCD28 stimulation. Immunoprecipitated CNA in F–H was detected by Trueblot. Data are representative of 3 independent experiments with 3 mice each group (A–F) and 3 experiments (G and H). The error bars show the mean ± SEM. The significances of differences were determined by 2-tailed Student’s t test. Significance was determined by the 2-tailed Student’s t test. *P < 0.05.

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