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USP16-mediated deubiquitination of calcineurin A controls peripheral T cell maintenance
Yu Zhang, … , Yi-yuan Li, Jin Jin
Yu Zhang, … , Yi-yuan Li, Jin Jin
Published May 28, 2019
Citation Information: J Clin Invest. 2019;129(7):2856-2871. https://doi.org/10.1172/JCI123801.
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Research Article Cell biology Immunology

USP16-mediated deubiquitination of calcineurin A controls peripheral T cell maintenance

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Abstract

Calcineurin acts as a calcium-activated phosphatase that dephosphorylates various substrates, including members of the nuclear factor of activated T cells (NFAT) family, to trigger their nuclear translocation and transcriptional activity. However, the detailed mechanism regulating the recruitment of NFATs to calcineurin remains poorly understood. Here, we report that calcineurin A (CNA), encoded by PPP3CB or PPP3CC, is constitutively ubiquitinated on lysine 327, and this polyubiquitin chain is rapidly removed by ubiquitin carboxyl-terminal hydrolase 16 (USP16) in response to intracellular calcium stimulation. The K29-linked ubiquitination of CNA impairs NFAT recruitment and transcription of NFAT-targeted genes. USP16 deficiency prevents calcium-triggered deubiquitination of CNA in a manner consistent with defective maintenance and proliferation of peripheral T cells. T cell–specific USP16 knockout mice exhibit reduced severity of experimental autoimmune encephalitis and inflammatory bowel disease. Our data reveal the physiological function of CNA ubiquitination and its deubiquitinase USP16 in peripheral T cells. Notably, our results highlight a critical mechanism for the regulation of calcineurin activity and a novel immunosuppressive drug target for the treatment of autoimmune diseases.

Authors

Yu Zhang, Rong-bei Liu, Qian Cao, Ke-qi Fan, Ling-jie Huang, Jian-shuai Yu, Zheng-jun Gao, Tao Huang, Jiang-yan Zhong, Xin-tao Mao, Fei Wang, Peng Xiao, Yuan Zhao, Xin-hua Feng, Yi-yuan Li, Jin Jin

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Figure 2

USP16 selectively associates with CNA encoded by PPP3CB and PPP3CC.

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USP16 selectively associates with CNA encoded by PPP3CB and PPP3CC.
(A) ...
(A) HEK293T cells were transfected with 3CB and distinct HA-tagged deubiquitinase (DUB) expression plasmids. IB of 3CB was followed by IP with anti-HA antibody in whole-cell lysates (WLs). (B) WT CD4+ T cells were transfected with NFAT luciferase reporters along with WT USP16 (USP16-WT) or its catalytically inactive mutant (USP16-CI) expression plasmids using nucleofection. The P/I-induced readouts were normalized to Renilla luciferase activity and are presented as fold change relative to unstimulated T cells. (C) WT CD4+ T cells were stimulated with αCD3/αCD28, and WLs were subjected to IP using anti-CNA antibody or rabbit IgG control (NC), followed by IB analysis of USP16. The cell lysates were also subjected to direct IB analyses (bottom 3 panels). Immunoprecipitated CNA was detected by Trueblot. (D) Confocal microscopy analysis of the colocalization of USP16, CNA, and DAPI in WT CD4+ T cells stimulated with αCD3/αCD28 as indicated. Scale bar: 5 μm. (E) HEK293T cells were transfected with indicated plasmids. IB of FLAG was performed followed by IP with anti-HA antibody in WLs. (F–G) Full-length and various truncated mutants of USP16 (F) or 3CB (G) expression plasmids were cotransfected in HEK293T cells. The interaction of these molecules was detected through the indicated IP and IB analyses. (H) Comparison of the amino acid sequences of the potential USP16-interacting motifs of 3 distinct CNA subunits. (I) Crystal structure of the CNA motif responsible for its interaction with USP16. (J) Full-length CNA and a USP16-interacting defective mutant (3CB-Δ86-91) were coexpressed with USP16 in HEK293T cells. IB of USP16 was performed followed by IP with anti-FLAG antibody in WLs. Data are representative of 3 independent experiments with 3 mice in each group (C–D) and 3 experiments (A, B, E–J).
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