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PML-RARA requires DNA methyltransferase 3A to initiate acute promyelocytic leukemia
Christopher B. Cole, … , Vincent Magrini, Timothy J. Ley
Christopher B. Cole, … , Vincent Magrini, Timothy J. Ley
Published November 23, 2015
Citation Information: J Clin Invest. 2016;126(1):85-98. https://doi.org/10.1172/JCI82897.
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Research Article Oncology

PML-RARA requires DNA methyltransferase 3A to initiate acute promyelocytic leukemia

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Abstract

The DNA methyltransferases DNMT3A and DNMT3B are primarily responsible for de novo methylation of specific cytosine residues in CpG dinucleotides during mammalian development. While loss-of-function mutations in DNMT3A are highly recurrent in acute myeloid leukemia (AML), DNMT3A mutations are almost never found in AML patients with translocations that create oncogenic fusion genes such as PML-RARA, RUNX1-RUNX1T1, and MLL-AF9. Here, we explored how DNMT3A is involved in the function of these fusion genes. We used retroviral vectors to express PML-RARA, RUNX1-RUNX1T1, or MLL-AF9 in bone marrow cells derived from WT or DNMT3A-deficient mice. Additionally, we examined the phenotypes of hematopoietic cells from Ctsg-PML-RARA mice, which express PML-RARA in early hematopoietic progenitors and myeloid precursors, with or without DNMT3A. We determined that the methyltransferase activity of DNMT3A, but not DNMT3B, is required for aberrant PML-RARA–driven self-renewal ex vivo and that DNMT3A is dispensable for RUNX1-RUNX1T1– and MLL-AF9–driven self-renewal. Furthermore, both the PML-RARA–driven competitive transplantation advantage and development of acute promyelocytic leukemia (APL) required DNMT3A. Together, these findings suggest that PML-RARA requires DNMT3A to initiate APL in mice.

Authors

Christopher B. Cole, Angela M. Verdoni, Shamika Ketkar, Elizabeth R. Leight, David A. Russler-Germain, Tamara L. Lamprecht, Ryan T. Demeter, Vincent Magrini, Timothy J. Ley

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Figure 3

Expression analysis of previously identified PML-RARA–dysregulated genes in GMP cells derived from PR+/–, PR+/– Dnmt3a–/–, and Dnmt3a–/– mice.

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Expression analysis of previously identified PML-RARA–dysregulated genes...
(A and B) Using Affymetrix Mouse Exon 1.0ST arrays, we interrogated gene expression in GMP cells purified from BM cells of mice transplanted with WT (n = 4), PR+/– (n = 2), PR+/– Dnmt3a–/– (n = 4), or Dnmt3a–/– (n = 3) marrow cells that were harvested 6–8 weeks later. (A) Mean fold changes for 239 probe sets previously found to be significantly dysregulated in GMP cells derived from the BM of 6- to 8-week-old Ctsg-PML-RARA mice (labeled as PR+/–a) versus WT GMP cells (n = 4 for each; ref. 31 and Supplemental Table 3). The mean fold changes (compared with those for WT GMP cells) for the 112 probe sets that were upregulated in the PR+/–a mice are shown in the left panel, and the mean fold changes for the 127 probe sets that were downregulated are shown on the right. Fold changes for the PR+/–b, PR+/– Dnmt3a–/–, and Dnmt3a–/– probe sets were calculated by comparison with the WT data from the current set of experimental data. (B) Heatmap of Z-scored data using the same 239 PR+/–-dysregulated probe sets defined in Wartman et al. (31) and displaying the average values obtained from the arrays generated from GMP-purified cells with the designated genotype used in this study. The list of genes with significant variation in expression levels was generated using a fold change of 2 and an FDR criterion of 0.05 or less. Bar plot P values (***P < 0.001) are based on Student’s paired t test, with a 2-tailed distribution.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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