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Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma
Gareth R. Howell, Danilo G. Macalinao, Gregory L. Sousa, Michael Walden, Ileana Soto, Stephen C. Kneeland, Jessica M. Barbay, Benjamin L. King, Jeffrey K. Marchant, Matthew Hibbs, Beth Stevens, Ben A. Barres, Abbot F. Clark, Richard T. Libby, Simon W.M. John
Gareth R. Howell, Danilo G. Macalinao, Gregory L. Sousa, Michael Walden, Ileana Soto, Stephen C. Kneeland, Jessica M. Barbay, Benjamin L. King, Jeffrey K. Marchant, Matthew Hibbs, Beth Stevens, Ben A. Barres, Abbot F. Clark, Richard T. Libby, Simon W.M. John
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Research Article Ophthalmology

Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma

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Abstract

Glaucoma is one of the most common neurodegenerative diseases. Despite this, the earliest stages of this complex disease are still unclear. This study was specifically designed to identify early stages of glaucoma in DBA/2J mice. To do this, we used genome-wide expression profiling of optic nerve head and retina and a series of computational methods. Eyes with no detectable glaucoma by conventional assays were grouped into molecularly defined stages of disease using unbiased hierarchical clustering. These stages represent a temporally ordered sequence of glaucoma states. We then determined networks and biological processes that were altered at these early stages. Early-stage expression changes included upregulation of both the complement cascade and the endothelin system, and so we tested the therapeutic value of separately inhibiting them. Mice with a mutation in complement component 1a (C1qa) were protected from glaucoma. Similarly, inhibition of the endothelin system with bosentan, an endothelin receptor antagonist, was strongly protective against glaucomatous damage. Since endothelin 2 is potently vasoconstrictive and was produced by microglia/macrophages, our data provide what we believe to be a novel link between these cell types and vascular dysfunction in glaucoma. Targeting early molecular events, such as complement and endothelin induction, may provide effective new treatments for human glaucoma.

Authors

Gareth R. Howell, Danilo G. Macalinao, Gregory L. Sousa, Michael Walden, Ileana Soto, Stephen C. Kneeland, Jessica M. Barbay, Benjamin L. King, Jeffrey K. Marchant, Matthew Hibbs, Beth Stevens, Ben A. Barres, Abbot F. Clark, Richard T. Libby, Simon W.M. John

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Figure 3

Clustered stages allow sensitive detection of early changes in the ONH.

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Clustered stages allow sensitive detection of early changes in the ONH.
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(A) The number of DE genes in morphologically defined dataset 1 was compared with the number of DE genes in molecularly defined dataset 2. 1,385 genes were DE at least 2-fold compared with controls in molecularly defined stages 1–3. This is in comparison to only 100 genes for the NOE2 group. Importantly, the expression patterns that define stages 1–3 represent changes that occur prior to detectable morphological damage. (B) The fold changes for individual genes were often 2 or 3 times greater for the molecularly compared with morphologically defined groups. For this figure, stage 3 is included to the left of the line indicating detectable glaucoma. This is because the gene expression differences that determine inclusion in this stage occur prior to detectable optic nerve damage. (C) The molecularly defined stages allow identification of more DE genes with a particular GO term than the morphologically defined data. The expression of genes with immune-modulating functions, including chemotaxis and leukocyte activation, change early in the ONH. (D) KEGG pathway analysis suggests that ECM-receptor interactions, MAPK signaling, and Toll-like receptor signaling pathways are among the earliest pathways to become activated. *q ≤ 0.05 compared with Gpnmb+ controls.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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