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Argonaute proteins are key determinants of RNAi efficacy, toxicity, and persistence in the adult mouse liver
Dirk Grimm, … , Theresa A. Storm, Mark A. Kay
Dirk Grimm, … , Theresa A. Storm, Mark A. Kay
Published August 9, 2010
Citation Information: J Clin Invest. 2010;120(9):3106-3119. https://doi.org/10.1172/JCI43565.
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Research Article Genetics

Argonaute proteins are key determinants of RNAi efficacy, toxicity, and persistence in the adult mouse liver

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Abstract

shRNA overexpression from viral gene therapy vectors can trigger cytotoxicity leading to organ failure and lethality in mice and rats. This process likely involves saturation of endogenous cellular RNAi factors including exportin-5 (Xpo-5). Here, we have shown that Xpo-5 overexpression enhanced shRNA efficiency in the liver of adult mice but increased hepatotoxicity. We identified the 4 members of the human Argonaute (Ago) protein family as downstream factors involved in saturation of endogenous cellular RNAi, all of which were able to interact with shRNAs in cells and mice. In Ago/shRNA coexpression studies, Ago-2 (Slicer) was the primary rate-limiting determinant of both in vitro and in vivo RNAi efficacy, toxicity, and persistence. In adult mice, vector-based Ago-2/Xpo-5 coexpression enhanced U6-driven shRNA silencing of exogenous and endogenous hepatic targets, reduced hepatotoxicity, and extended RNAi stability by more than 3 months. Use of weaker RNA polymerase III promoters to minimize shRNA expression likewise alleviated in vivo toxicity and permitted greater than 95% persistent knockdown of hepatitis B virus and other transgenes in mouse liver for more than 1 year. Our studies substantiate that abundant small RNAs can overload the endogenous RNAi pathway and reveal possible strategies for reducing hepatotoxicity of short- and long-term clinical gene silencing in humans.

Authors

Dirk Grimm, Lora Wang, Joyce S. Lee, Nina Schürmann, Shuo Gu, Kathleen Börner, Theresa A. Storm, Mark A. Kay

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Figure 2

Influence of homology and target location on Ago-2 dependence.

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Influence of homology and target location on Ago-2 dependence.
(A) Combi...
(A) Combinations of perfect (P) or imperfect (I) RNAi duplexes (D) or targets (T), with corresponding constructs based on miR-122 or -30 (synthetic [syn] perfect or wild-type imperfect targets). Both sh30 duplexes are perfect but bind with perfect or imperfect homology. Standard sh­RNAs against ORFs served as positive and scrambled shRNAs as negative controls for Ago-2 dependence. RSV, Rous sarcoma virus; SV40p, SV40 promoter. (B) 293 cells were transfected with hAAT reporters from A and anti-ORF shRNA (H25), anti-3′UTR sh122, or a negative control. (C) Corresponding RNA expression (Northern blot). H25 and sh122 (perfect targets) were enhanced by Ago-2 and blocked by the other Agos. Target location thus does not affect Ago dependence of perfect duplexes. sh122 silenced imperfect 3′UTR targets irrespective of Ago and without mRNA degradation (C, orange), implying miRNA-like activity. (D) For in vivo validation, we transfected murine livers (n = 3–5, day 3) with miR-30–tagged luciferase and shRNA/Ago plasmids. Only the shRNA against the perfect target was activated by Ago-2 (red box). (E) When expressed long-term in mice (n = 3) via AAVs, the shRNA against the imperfect target also saturated Ago-2 (orange box/arrow). (F) Representative luciferase expression. (G) Coinfection of adult mice (n = 3) with AAV encoding hAAT fused with no target or with imperfect or perfect targets for hepatic miR-122, plus AAV expressing Ago-2 (or a CMV control). The drop in expression from the perfectly tagged hAAT construct in the presence of Ago-2 (orange line/purple box) shows that highly abundant miRNAs can also saturate Ago-2. The only combination yielding no Ago-2 saturation was imperfect miRNA duplexes against imperfect targets (purple line/green box).

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ISSN: 0021-9738 (print), 1558-8238 (online)

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