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Inverted chimeric RNAi molecules synergistically cotarget MYC and KRAS in KRAS-driven cancers
Yogitha S. Chareddy, … , Martin Egli, Chad V. Pecot
Yogitha S. Chareddy, … , Martin Egli, Chad V. Pecot
Published July 31, 2025
Citation Information: J Clin Invest. 2025;135(19):e187204. https://doi.org/10.1172/JCI187204.
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Research Article Oncology

Inverted chimeric RNAi molecules synergistically cotarget MYC and KRAS in KRAS-driven cancers

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Abstract

Mutant KRAS has been implicated in driving a quarter of all cancer types. Although inhibition of the KRASG12C mutant protein has shown clinical promise, there is still a need for therapies that overcome resistance and target non-KRASG12C mutations. KRAS activates downstream MYC, which is also a difficult-to-drug oncoprotein. We have developed an “inverted” RNAi molecule with the passenger strand of a MYC-targeting siRNA fused to the guide strand of a KRAS-targeting siRNA. The chimeric molecule simultaneously inhibits KRAS and MYC, showing marked improvements in efficacy beyond the individual siRNA components. This effect is mediated by 5′-dT overhangs following endosomal metabolism. The synergistic RNAi activity led to a more than 10- to 40-fold improvement in inhibition of cancer viability in vitro. When conjugated to an EGFR-targeting ligand, the chimeric siRNA was delivered to and internalized by tumor cells. As compared with individual targeting siRNAs, the chimeric design resulted in considerably improved metabolic stability in tumors, enhanced silencing of both oncogenes, and reduced tumor progression in multiple cancer models. This inverted chimeric design establishes proof of concept for ligand-directed, dual silencing of KRAS and MYC in cancer and constitutes an innovative molecular strategy for cotargeting any two genes of interest, which has broad implications.

Authors

Yogitha S. Chareddy, Hayden P. Huggins, Snehasudha S. Sahoo, Lyla J. Stanland, Christina Gutierrez-Ford, Kristina M. Whately, Lincy Edatt, Salma H. Azam, Matthew C. Fleming, Jonah Im, Alessandro Porrello, Imani Simmons, Jillian L. Perry, Albert A. Bowers, Martin Egli, Chad V. Pecot

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Figure 1

Design and in vitro activity of MYC/KRAS chimeric siRNAs.

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Design and in vitro activity of MYC/KRAS chimeric siRNAs.
(A) Structures...
(A) Structures of the inverted and serial conformations of a MYC/KRAS cotargeting chimeric siRNA. In the inverted conformation (M2/K2 Inverted Chimera V1), the MYC siRNA passenger (sense, S) strand is linked via a d(T)4 bridge to the KRAS siRNA guide (antisense, AS) strand. In the serial conformation (M2/K2 Serial Chimera V1), the MYC siRNA guide (antisense) strand is linked via a d(T)4 bridge to the KRAS siRNA guide (antisense) strand. (B and C) Relative MYC and KRAS mRNA expression by RT-qPCR after siRNA treatment at 5 and 20 nM for 48–72 hours in A427 and MIA PaCa-2 cells. In conditions with MYC plus KRAS cotransfection, each of the MYC and KRAS siRNAs was transfected at the indicated dose. Data are shown as the mean ± SEM.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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