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YTHDF1 loss in dendritic cells potentiates radiation-induced antitumor immunity via STING-dependent type I IFN production
Chuangyu Wen, … , Hua Laura Liang, Ralph R. Weichselbaum
Chuangyu Wen, … , Hua Laura Liang, Ralph R. Weichselbaum
Published September 26, 2024
Citation Information: J Clin Invest. 2024;134(23):e181612. https://doi.org/10.1172/JCI181612.
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Research Article Immunology Oncology

YTHDF1 loss in dendritic cells potentiates radiation-induced antitumor immunity via STING-dependent type I IFN production

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Abstract

The RNA N6-methyladenosine (m6A) reader YTHDF1 is implicated in cancer etiology and progression. We discovered that radiotherapy (RT) increased YTHDF1 expression in dendritic cells (DCs) of PBMCs from patients with cancer, but not in other immune cells tested. Elevated YTHDF1 expression in DCs was associated with poor outcomes for patients receiving RT. We found that loss of Ythdf1 in DCs enhanced the antitumor effects of ionizing radiation (IR) by increasing the cross-priming capacity of DCs across multiple murine cancer models. Mechanistically, IR upregulated YTHDF1 expression in DCs through stimulator of IFN genes/type I IFN (STING/IFN-I) signaling. YTHDF1 in turn triggered STING degradation by increasing lysosomal cathepsins, thereby reducing IFN-I production. We created a YTHDF1 deletion/inhibition prototype DC vaccine that significantly improved the therapeutic effect of RT and radioimmunotherapy in a murine melanoma model. Our findings reveal a layer of regulation between YTHDF1/m6A and STING in response to IR, which opens new paths for the development of YTHDF1-targeting therapies.

Authors

Chuangyu Wen, Liangliang Wang, András Piffkó, Dapeng Chen, Xianbin Yu, Katarzyna Zawieracz, Jason Bugno, Kaiting Yang, Emile Z. Naccasha, Fei Ji, Jiaai Wang, Xiaona Huang, Stephen Y. Luo, Lei Tan, Bin Shen, Cheng Luo, Megan E. McNerney, Steven J. Chmura, Ainhoa Arina, Sean Pitroda, Chuan He, Hua Laura Liang, Ralph R. Weichselbaum

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Figure 5

Ythdf1 deletion diminishes the cathepsin-mediated decrease in STING expression in DCs.

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Ythdf1 deletion diminishes the cathepsin-mediated decrease in STING exp...
(A) WT and Ythdf1-cKO mice were injected s.c. with B16-OZ cells. Tumor-bearing mice were treated with local IR (20 Gy, 1 dose) when the tumor volume reached 100–200 mm3. Expression of cathepsins A and B in tumor-infiltrating DCs (CD45+F4/80–CD11c+MHC-II+) was detected via flow cytometry on day 5 after IR (n = 5). (B) BMDCs from WT mice were cocultured with 40 Gy–pretreated B16-OZ cells for 24 hours. Purified CD11c+ cells were collected to measure the enrichment of cathepsin A and B mRNA in the YTHDF1-immunoprecipitated RNA fraction (n = 3). (C) BMDCs from WT mice were treated with 2′3′-cGAMP and E64 for 12 hours, and STING expression was detected by Western blotting. (D) WT BMDCs and BMDCs with Ythdf1 deletion were treated with 2′3′-cGAMP for 12 hours, and STING expression was detected by Western blotting. (E) BMDCs from WT mice were stimulated with 2′3′-cGAMP. After immunoprecipitation with STING antibody, the expression of cathepsins A and B in whole-cell lysates was detected by Western blot. (F and G) BMDCs from WT mice were pretreated with E64 for 24 hours and then cocultured with 40 Gy–pretreated or nonirradiated B16-OZ cells for 8 hours. Purified CD11c+ cells were incubated for another 2 days. Supernatants were collected to measure IFN-β by ELISA (n = 3) (F), and cells were collected to measure Ifnb mRNA levels (n = 3) (G). (H) B16-OZ tumor–bearing WT mice were treated with local IR (20 Gy, 1 dose) and 50 μM E64 (i.t., daily). Tumor growth was monitored after IR. (I) Mechanism of how YTHDF1 affects STING/IFN-I signaling in DCs. IR-induced YTHDF1 increases the degradation of STING via cathepsins in the lysosomes of DCs, ultimately leading to decreased IFN-I production. Data are represented as the mean ± SEM and are representative of 2 or 3 independent experiments. Two-sided, unpaired Student’s t test (B), 1-way ANOVA with Tukey’s multiple-comparison test (A, F, and G), and 2-way ANOVA with Tukey’s multiple-comparison test (H). ***P < 0.001.

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