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YTHDF1 loss in dendritic cells potentiates radiation-induced antitumor immunity via STING-dependent type I IFN production
Chuangyu Wen, … , Hua Laura Liang, Ralph R. Weichselbaum
Chuangyu Wen, … , Hua Laura Liang, Ralph R. Weichselbaum
Published September 26, 2024
Citation Information: J Clin Invest. 2024;134(23):e181612. https://doi.org/10.1172/JCI181612.
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Research Article Immunology Oncology

YTHDF1 loss in dendritic cells potentiates radiation-induced antitumor immunity via STING-dependent type I IFN production

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Abstract

The RNA N6-methyladenosine (m6A) reader YTHDF1 is implicated in cancer etiology and progression. We discovered that radiotherapy (RT) increased YTHDF1 expression in dendritic cells (DCs) of PBMCs from patients with cancer, but not in other immune cells tested. Elevated YTHDF1 expression in DCs was associated with poor outcomes for patients receiving RT. We found that loss of Ythdf1 in DCs enhanced the antitumor effects of ionizing radiation (IR) by increasing the cross-priming capacity of DCs across multiple murine cancer models. Mechanistically, IR upregulated YTHDF1 expression in DCs through stimulator of IFN genes/type I IFN (STING/IFN-I) signaling. YTHDF1 in turn triggered STING degradation by increasing lysosomal cathepsins, thereby reducing IFN-I production. We created a YTHDF1 deletion/inhibition prototype DC vaccine that significantly improved the therapeutic effect of RT and radioimmunotherapy in a murine melanoma model. Our findings reveal a layer of regulation between YTHDF1/m6A and STING in response to IR, which opens new paths for the development of YTHDF1-targeting therapies.

Authors

Chuangyu Wen, Liangliang Wang, András Piffkó, Dapeng Chen, Xianbin Yu, Katarzyna Zawieracz, Jason Bugno, Kaiting Yang, Emile Z. Naccasha, Fei Ji, Jiaai Wang, Xiaona Huang, Stephen Y. Luo, Lei Tan, Bin Shen, Cheng Luo, Megan E. McNerney, Steven J. Chmura, Ainhoa Arina, Sean Pitroda, Chuan He, Hua Laura Liang, Ralph R. Weichselbaum

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Figure 4

Ythdf1 deletion enhances STING/IFN-I signaling in DCs.

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Ythdf1 deletion enhances STING/IFN-I signaling in DCs.
(A) GSEA showing...
(A) GSEA showing an increased IFN-β response in DCs with Ythdf1 deletion versus WT DCs. (B) WT and Ythdf1-cKO mice were injected s.c. with B16-OZ cells. Tumor-bearing mice underwent local IR (20 Gy, 1 dose) when the tumor volume reached 100–200 mm3, and tumors were excised on day 3 after IR for IFN-β ELISA (n = 5). (C–E) BMDCs from Ythdf1-cKO mice were cocultured with 40 Gy–pretreated or nonirradiated B16-OZ cells for 8 hours. Purified CD11c+ cells were incubated for another 2 days. Supernatants were collected to measure IFN-β by ELISA (n = 3) (C). Purified CD11c+ cells were collected to measure mRNA levels of Ifnb (D) and Isg15, Ifit3, and Cxcl10 (E) by qPCR (n = 3). (F) BMDCs from Ythdf1-cKO and Ythdf1/Ifnar1-cKO mice were cocultured with B16-OZ cells for 8 hours. Purified CD11c+ cells were incubated with CD8+ T cells from OT-I mice for another 3 days. IFN-γ–producing cells were enumerated by ELISPOT (n = 3). (G) B16-OZ tumors in WT and Ythdf1-cKO mice were treated with IR and/or 200 μg anti-IFNAR1 mAb injected i.t. twice weekly. Tumor growth was monitored after IR. (H and I) BMDCs from Ythdf1-cKO and Ythdf1/Sting-cKO mice were cocultured with B16-OZ cells for 8 hours. Purified CD11c+ cells were incubated for an additional 2 days. IFN-β levels in supernatants were measured by ELISA (n = 3) (H). Purified CD11c+ cells were incubated with CD8+ T cells from OT-I mice for another 3 days. Then IFN-γ–producing cells were enumerated by ELISPOT (n = 3) (I). Data are presented as the mean ± SEM and are representative of 2 or 3 independent experiments. (B–I) One-way ANOVA with Tukey’s multiple-comparison test (B–F, H, and I) and 2-way ANOVA with Tukey’s multiple-comparison test (G). *P < 0.05, **P < 0.01, and ***P < 0.001.

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