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KCTD1/KCTD15 complexes control ectodermal and neural crest cell functions, and their impairment causes aplasia cutis
Jackelyn R. Raymundo, Hui Zhang, Giovanni Smaldone, Wenjuan Zhu, Kathleen E. Daly, Benjamin J. Glennon, Giovanni Pecoraro, Marco Salvatore, William A. Devine, Cecilia W. Lo, Luigi Vitagliano, Alexander G. Marneros
Jackelyn R. Raymundo, Hui Zhang, Giovanni Smaldone, Wenjuan Zhu, Kathleen E. Daly, Benjamin J. Glennon, Giovanni Pecoraro, Marco Salvatore, William A. Devine, Cecilia W. Lo, Luigi Vitagliano, Alexander G. Marneros
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Research Article Dermatology Development

KCTD1/KCTD15 complexes control ectodermal and neural crest cell functions, and their impairment causes aplasia cutis

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Abstract

Aplasia cutis congenita (ACC) is a congenital epidermal defect of the midline scalp and has been proposed to be due to a primary keratinocyte abnormality. Why it forms mainly at this anatomic site has remained a long-standing enigma. KCTD1 mutations cause ACC, ectodermal abnormalities, and kidney fibrosis, whereas KCTD15 mutations cause ACC and cardiac outflow tract abnormalities. Here, we found that KCTD1 and KCTD15 can form multimeric complexes and can compensate for each other’s loss and that disease mutations are dominant negative, resulting in lack of KCTD1/KCTD15 function. We demonstrated that KCTD15 is critical for cardiac outflow tract development, whereas KCTD1 regulates distal nephron function. Combined inactivation of KCTD1/KCTD15 in keratinocytes resulted in abnormal skin appendages but not in ACC. Instead, KCTD1/KCTD15 inactivation in neural crest cells resulted in ACC linked to midline skull defects, demonstrating that ACC is not caused by a primary defect in keratinocytes but is a secondary consequence of impaired cranial neural crest cells, giving rise to midline cranial suture cells that express keratinocyte-promoting growth factors. Our findings explain the clinical observations in patients with KCTD1 versus KCTD15 mutations, establish KCTD1/KCTD15 complexes as critical regulators of ectodermal and neural crest cell functions, and define ACC as a neurocristopathy.

Authors

Jackelyn R. Raymundo, Hui Zhang, Giovanni Smaldone, Wenjuan Zhu, Kathleen E. Daly, Benjamin J. Glennon, Giovanni Pecoraro, Marco Salvatore, William A. Devine, Cecilia W. Lo, Luigi Vitagliano, Alexander G. Marneros

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Figure 1

KCTD1 can form heteropentamers with KCTD15.

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KCTD1 can form heteropentamers with KCTD15.
(A) Proteins with the highes...
(A) Proteins with the highest number of total peptides identified by mass spectrometry of immunoprecipitates (IP) with anti-FLAG antibodies using HEK293 cells that overexpress KCTD1-FLAG (IP KCTD1) or KCTD15-FLAG (IP KCTD15). (B) Left: IP of KCTD1-FLAG and immunoblotting for KCTD15. Right: IP of KCTD15-FLAG and immunoblotting for KCTD1. (C) Immunoblotting for KCTD15 of HEK293 cell lysates using KCTD1 or KCTD15 antibodies for IP. (D) Human KCTD1 and KCTD15 amino acid sequences show a high sequence identity, especially in the BTB domain (blue/yellow). Blue stars, amino acids affected by SEN syndrome mutations in KCTD1; red star, amino acid affected by KCTD15 mutation. (E) Left: AlphaFold model of the KCTD1 (green)/KCTD15 (orange) heteropentamer. Right: Reliability of AlphaFold predictions assessed by the predicted aligned error (PAE) matrix, which provides a distance error for every pair of residues within the complex. Blue color, associated with low estimated errors of the distance of pairs of residues, is a strong indication of the global reliability of the model. These data support that KCTD1 and KCTD15 can form stable pentamers in any stoichiometry (here pentamer formation predicted to be stable between 3 KCTD1 and 2 KCTD15 monomers). (F) Top: Reliability of AlphaFold predictions for binding between 5 KCTD1 BTB domains (homomers) and 5 KCTD15 BTB domains (homomers) assessed by the PAE matrix, demonstrating that such an interaction would be unstable. Bottom: AlphaFold predictions for the association of 5 KCTD1 C-terminal domains and 5 KCTD15 C-terminal domains show that the tendency to form heteromers is greater than the tendency to form homomers (e.g., chain A forms non-red boxes with itself, and with chains B, D, H, and J, predicting heteromer formation rather than homomer formation). (G) Left: Asp104 (blue) at the intersubunit interface of the KCTD15 pentamer (BTB domains). Middle: Asp104 forms an intersubunit salt bridge with Arg118 between KCTD15 subunits. Right: Similar electrostatic interaction formed by Asp104 (KCTD15) and Arg92 (KCTD1), the residue that is equivalent to Arg118 of KCTD15, observed at the KCTD1-KCTD15 interface of the heteropentamer.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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