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Immune checkpoint blockade induces distinct alterations in the microenvironments of primary and metastatic brain tumors
Lu Sun, … , Won Kim, Robert M. Prins
Lu Sun, … , Won Kim, Robert M. Prins
Published September 1, 2023
Citation Information: J Clin Invest. 2023;133(17):e169314. https://doi.org/10.1172/JCI169314.
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Research Article Immunology Neuroscience

Immune checkpoint blockade induces distinct alterations in the microenvironments of primary and metastatic brain tumors

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Abstract

In comparison with responses in recurrent glioblastoma (rGBM), the intracranial response of brain metastases (BrM) to immune checkpoint blockade (ICB) is less well studied. Here, we present an integrated single-cell RNA-Seq (scRNA-Seq) study of 19 ICB-naive and 9 ICB-treated BrM samples from our own and published data sets. We compared them with our previously published scRNA-Seq data from rGBM and found that ICB led to more prominent T cell infiltration into BrM than rGBM. These BrM-infiltrating T cells exhibited a tumor-specific phenotype and displayed greater activated/exhausted features. We also used multiplex immunofluorescence and spatial transcriptomics to reveal that ICB reduced a distinct CD206+ macrophage population in the perivascular space, which may modulate T cell entry into BrM. Furthermore, we identified a subset of progenitor exhausted T cells that correlated with longer overall survival in BrM patients. Our study provides a comprehensive immune cellular landscape of ICB’s effect on metastatic brain tumors and offers insights into potential strategies for improving ICB efficacy for brain tumor patients.

Authors

Lu Sun, Jenny C. Kienzler, Jeremy G. Reynoso, Alexander Lee, Eileen Shiuan, Shanpeng Li, Jiyoon Kim, Lizhong Ding, Amber J. Monteleone, Geoffrey C. Owens, Joanna J. Phillips, Richard G. Everson, David Nathanson, Timothy F. Cloughesy, Gang Li, Linda M. Liau, Willy Hugo, Won Kim, Robert M. Prins

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Figure 5

ST and mIF analysis of immune subtypes in BrM and rGBM.

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ST and mIF analysis of immune subtypes in BrM and rGBM.
(A) Spatial expr...
(A) Spatial expression pattern of selected marker genes: PMEL, melanoma BrM; EPCAM, lung BrM; SOX2, rGBM; MKI67, cycling cells; GFAP, brain cells. (B) Fraction of CD8-Tterm.ex among all tumor-adjacent spots in each sample. (C) Spatial distribution of CD8-Tterm.ex subtype on melanoma and lung BrM and rGBM tissue sections. (D) Box plot showing the fraction of MRC1+ macrophage subtypes in the neighborhood of vascular cell spots. ***P ≤ 1 × 10–15. (E) Representative mIF images of CD3 and CD206 staining in blood vessel–enriched regions in 5 ICB-naive and 5 ICB-treated BrM tumors. Original magnification, × 20. (F) mIF quantification showing the number of CD3+ and CD14+CD206+ cells per mm2 of tumor section within the blood vessel–enriched regions (50 μm in diameter around α-SMA+ vessels). The analysis includes 5 BrM and 5 BrM.ICB patients. Each dot represents a patient. For all box plots, the lower and upper bounds indicate the 25th and 75th percentiles and the middle lines the median values. P values were calculated using a 2-sided Wilcoxon’s rank-sum test.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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