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SHP2 inhibition reduces leukemogenesis in models of combined genetic and epigenetic mutations
Ruchi Pandey, Baskar Ramdas, Changlin Wan, George Sandusky, Morvarid Mohseni, Chi Zhang, Reuben Kapur
Ruchi Pandey, Baskar Ramdas, Changlin Wan, George Sandusky, Morvarid Mohseni, Chi Zhang, Reuben Kapur
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Concise Communication Hematology Oncology

SHP2 inhibition reduces leukemogenesis in models of combined genetic and epigenetic mutations

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Abstract

In patients with acute myeloid leukemia (AML), 10% to 30% with the normal karyotype express mutations in regulators of DNA methylation, such as TET2 or DNMT3A, in conjunction with activating mutation in the receptor tyrosine kinase FLT3. These patients have a poor prognosis because they do not respond well to established therapies. Here, utilizing mouse models of AML that recapitulate cardinal features of the human disease and bear a combination of loss-of-function mutations in either Tet2 or Dnmt3a along with expression of Flt3ITD, we show that inhibition of the protein tyrosine phosphatase SHP2, which is essential for cytokine receptor signaling (including FLT3), by the small molecule allosteric inhibitor SHP099 impairs growth and induces differentiation of leukemic cells without impacting normal hematopoietic cells. We also show that SHP099 normalizes the gene expression program associated with increased cell proliferation and self-renewal in leukemic cells by downregulating the Myc signature. Our results provide a new and more effective target for treating a subset of patients with AML who bear a combination of genetic and epigenetic mutations.

Authors

Ruchi Pandey, Baskar Ramdas, Changlin Wan, George Sandusky, Morvarid Mohseni, Chi Zhang, Reuben Kapur

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Figure 4

Effect of SHP099 treatment on gene expression in Tet2–/–Flt3ITD (TF) cells.

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Effect of SHP099 treatment on gene expression in Tet2–/–Flt3ITD (TF) cel...
Lineage-depleted bone marrow cells from individual mice (n = 3) were expanded in cytokine cocktail (SCF, IL-3, and IL-6) and treated with SHP099 or vehicle for 24 hours. RNA was isolated and subjected to RNA-seq analysis. (A) Heatmap of differentially expressed genes regulating proliferation. (B) GSEA of genes regulating proliferation in TF vehicle-treated vs. WT cells. (C) GSEA analysis of genes regulating proliferation in TF vehicle- vs. SHP099-treated cells. (D) Heatmap of differentially expressed genes in the MYC pathway. (E) GSEA analysis of MYC signature in TF vehicle vs. WT treatment. (F) GSEA analysis of MYC signature in TF vehicle- vs. SHP099-treated cells. (G) Expression of genes that regulate self-renewal. Individual values from 3 biological replicates are shown. Columns indicate the median value and error bars denote the range. The color code for the heatmap is indicated.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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