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Oncogenic TRK fusions are amenable to inhibition in hematologic malignancies
Justin Taylor, Dean Pavlick, Akihide Yoshimi, Christina Marcelus, Stephen S. Chung, Jaclyn F. Hechtman, Ryma Benayed, Emiliano Cocco, Benjamin H. Durham, Lillian Bitner, Daichi Inoue, Young Rock Chung, Kerry Mullaney, Justin M. Watts, Eli L. Diamond, Lee A. Albacker, Tariq I. Mughal, Kevin Ebata, Brian B. Tuch, Nora Ku, Maurizio Scaltriti, Mikhail Roshal, Maria Arcila, Siraj Ali, David M. Hyman, Jae H. Park, Omar Abdel-Wahab
Justin Taylor, Dean Pavlick, Akihide Yoshimi, Christina Marcelus, Stephen S. Chung, Jaclyn F. Hechtman, Ryma Benayed, Emiliano Cocco, Benjamin H. Durham, Lillian Bitner, Daichi Inoue, Young Rock Chung, Kerry Mullaney, Justin M. Watts, Eli L. Diamond, Lee A. Albacker, Tariq I. Mughal, Kevin Ebata, Brian B. Tuch, Nora Ku, Maurizio Scaltriti, Mikhail Roshal, Maria Arcila, Siraj Ali, David M. Hyman, Jae H. Park, Omar Abdel-Wahab
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Concise Communication Hematology Oncology

Oncogenic TRK fusions are amenable to inhibition in hematologic malignancies

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Abstract

Rearrangements involving the neurotrophic receptor kinase genes (NTRK1, NTRK2, and NTRK3; hereafter referred to as TRK) produce oncogenic fusions in a wide variety of cancers in adults and children. Although TRK fusions occur in fewer than 1% of all solid tumors, inhibition of TRK results in profound therapeutic responses, resulting in Breakthrough Therapy FDA approval of the TRK inhibitor larotrectinib for adult and pediatric patients with solid tumors, regardless of histology. In contrast to solid tumors, the frequency of TRK fusions and the clinical effects of targeting TRK in hematologic malignancies are unknown. Here, through an evaluation for TRK fusions across more than 7,000 patients with hematologic malignancies, we identified TRK fusions in acute lymphoblastic leukemia (ALL), acute myeloid leukemia (AML), histiocytosis, multiple myeloma, and dendritic cell neoplasms. Although TRK fusions occurred in only 0.1% of patients (8 of 7,311 patients), they conferred responsiveness to TRK inhibition in vitro and in vivo in a patient-derived xenograft and a corresponding AML patient with ETV6-NTRK2 fusion. These data identify that despite their individual rarity, collectively, TRK fusions are present in a wide variety of hematologic malignancies and predict clinically significant therapeutic responses to TRK inhibition.

Authors

Justin Taylor, Dean Pavlick, Akihide Yoshimi, Christina Marcelus, Stephen S. Chung, Jaclyn F. Hechtman, Ryma Benayed, Emiliano Cocco, Benjamin H. Durham, Lillian Bitner, Daichi Inoue, Young Rock Chung, Kerry Mullaney, Justin M. Watts, Eli L. Diamond, Lee A. Albacker, Tariq I. Mughal, Kevin Ebata, Brian B. Tuch, Nora Ku, Maurizio Scaltriti, Mikhail Roshal, Maria Arcila, Siraj Ali, David M. Hyman, Jae H. Park, Omar Abdel-Wahab

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Figure 3

Response of ETV6-NTRK2 fusion AML to larotrectinib and clinical relapse due to outgrowth of TRK fusion–negative clone.

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Response of ETV6-NTRK2 fusion AML to larotrectinib and clinical relapse ...
(A) Targeted RNA sequencing of peripheral blood mononuclear cells (PBMNCs) during larotrectinib treatment of the patient showing sequencing reads supporting ETV6-NTRK2 (red line) or ETV6-MECOM (blue line). Gray areas denote time when larotrectinib was being administered to the patient. (B) ETV6-NTRK2 expression in PBMNCs measured by qRT-PCR (red line) during treatment of the patient as well as absolute number of PB blasts (black line). Error bars represent mean and SD from triplicate samples (error bars for blast percentage in B represent average of 3 consecutive days of blast percentage surrounding this time point). Relative fold expression of ETV6-NTRK2 was defined relative to the last time point. (C) Serial FACS analysis of bone marrow samples before treatment (top 2 rows) and after treatment (bottom 2 rows) with larotrectinib. All cells were gated on live cells and gates with red labels were gated on blasts as well. Changes in the frequency of TRK fusion–positive (turquoise; CD34+ CD117- cells in the blast gate) and –negative (red; CD34+ CD117+ cells in the blast gate) blasts before and after treatment are shown. Normal monocytes (CD45+HLA-DR+CD11b+CD14+) are shown in purple.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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