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Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer
Eveline J. Steine, Mathias Ehrich, George W. Bell, Arjun Raj, Seshamma Reddy, Alexander van Oudenaarden, Rudolf Jaenisch, Heinz G. Linhart
Eveline J. Steine, Mathias Ehrich, George W. Bell, Arjun Raj, Seshamma Reddy, Alexander van Oudenaarden, Rudolf Jaenisch, Heinz G. Linhart
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Brief Report Oncology

Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer

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Abstract

Human cancer cells frequently have regions of their DNA hypermethylated, which results in transcriptional silencing of affected genes and promotion of tumor formation. However, it is still unknown whether cancer-associated aberrant DNA methylation is targeted to specific genomic regions, whether this methylation also occurs in noncancerous cells, and whether these epigenetic events are maintained in the absence of the initiating cause. Here we have addressed some of these issues by demonstrating that transgenic expression of DNA methyltransferase 3b (Dnmt3b) in the mouse colon initiates de novo DNA methylation of genes that are similar to genes that become methylated in human colon cancer. This is consistent with the notion that aberrant methylation in cancer may be attributable to targeting of specific sequences by Dnmt3b rather than to random methylation followed by clonal selection. We also showed that Dnmt3b-induced aberrant DNA methylation was maintained in regenerating tissue, even in the absence of continuous Dnmt3b expression. This supports the concept that transient stressors can cause permanent epigenetic changes in somatic stem cells and that these accumulate over the lifetime of an organism in analogy to DNA mutations.

Authors

Eveline J. Steine, Mathias Ehrich, George W. Bell, Arjun Raj, Seshamma Reddy, Alexander van Oudenaarden, Rudolf Jaenisch, Heinz G. Linhart

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Figure 3

Transient expression of Dnmt3b in vivo causes permanent epigenetic alterations of colonic mucosa.

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Transient expression of Dnmt3b in vivo causes permanent epigenetic alter...
(A) Dnmt3b transgene expression in colon epithelial cells in vivo was activated within 2 days of dox administration and returned to baseline within 1 week of dox withdrawal (n = 2 each; quantitative PCR analysis, mean ± SD). (B) Dnmt3b was induced in transgenic mice for 5 months (On, n = 5), and a subset was followed up for an additional period of 4 months after dox withdrawal (On/Off, n = 5). Controls were age-matched to the On/Off group (n = 4). Almost all genes that underwent significant de novo methylation (P < 0.01, t test) were equally methylated in the On and On/Off groups. (C) Dnmt3b-mediated de novo methylation was analyzed in dividing (prolif, n = 5) and nondividing mouse embryonic fibroblasts (mit, mitomycin C, n = 3; irrad, γ-irradiated, n = 2) in the absence of dox or after 14 days of dox-induced Dnmt3b transgene expression. Box plot shows combined methylation data of genes with significant de novo methylation in proliferating cells (P < 0.05, paired t test; n = 25). Box denotes interquartile range; line within box denotes median; whiskers denote 1.5× interquartile range; symbols denote outliers. Significant Dnmt3b-mediated de novo methylation was detected in both proliferating and growth-arrested cells, which suggests that cell division is not required for this process. P values between groups are shown by brackets.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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