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SARS-CoV-2–specific antibody rearrangements in prepandemic immune repertoires of risk cohorts and patients with COVID-19
Lisa Paschold, … , Christoph Schultheiß, Mascha Binder
Lisa Paschold, … , Christoph Schultheiß, Mascha Binder
Published October 16, 2020
Citation Information: J Clin Invest. 2021;131(1):e142966. https://doi.org/10.1172/JCI142966.
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Concise Communication Immunology

SARS-CoV-2–specific antibody rearrangements in prepandemic immune repertoires of risk cohorts and patients with COVID-19

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Abstract

A considerable fraction of B cells recognize severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with germline-encoded elements of their B cell receptor, resulting in the production of neutralizing and nonneutralizing antibodies. We found that antibody sequences from different discovery cohorts shared biochemical properties and could be retrieved across validation cohorts, confirming the stereotyped character of this naive response in coronavirus disease 2019 (COVID-19). While neutralizing antibody sequences were found independently of disease severity, in line with serological data, individual nonneutralizing antibody sequences were associated with fatal clinical courses, suggesting detrimental effects of these antibodies. We mined 200 immune repertoires from healthy individuals and 500 repertoires from patients with blood or solid cancers — all acquired prior to the pandemic — for SARS-CoV-2 antibody sequences. While the largely unmutated B cell rearrangements occurred in a substantial fraction of immune repertoires from young and healthy individuals, these sequences were less likely to be found in individuals over 60 years of age and in those with cancer. This reflects B cell repertoire restriction in aging and cancer, and may to a certain extent explain the different clinical courses of COVID-19 observed in these risk groups. Future studies will have to address if this stereotyped B cell response to SARS-CoV-2 emerging from unmutated antibody rearrangements will create long-lived memory.

Authors

Lisa Paschold, Donjete Simnica, Edith Willscher, Maria J.G.T. Vehreschild, Jochen Dutzmann, Daniel G. Sedding, Christoph Schultheiß, Mascha Binder

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Figure 1

SARS-CoV-2–specific antibody clusters.

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SARS-CoV-2–specific antibody clusters.
(A) Analysis of clonal B cell rec...
(A) Analysis of clonal B cell receptor lineages following evolutionary trajectories from B cell repertoires of patients with COVID-19. To determine connected antibody sequences, 20,000 clonotypes from B cell repertoires of antibody-positive patients, antibody-negative patients, and healthy individuals were analyzed using the BRILIA algorithm (9). The upper circle shows the overall view on connected and unconnected sequences, the lower circles show the percentage of connected sequences as well as the type of branching observed. Red dots indicate sequences deviating more than 2% from the respective germline sequence, indicating significant somatic hypermutation. (B) Cluster analysis of B cell repertoires of patients with COVID-19 to identify SARS-CoV-2–specific antibody rearrangements. Top 50 sequences of 34 antibody-positive and 12 antibody-negative repertoires were subjected to sequence alignments and hierarchical trees were generated using the FastTreeMP (10) algorithm. Subtrees containing more than 20 sequences were selected (with fewer than 10% from antibody-negative repertoires) (red). Of these, sequences that occurred in a minimum of 3 repertoires from patients with COVID-19 with a Levenshtein distance of 2 or less were selected for sequence set 1 (dark red and bold). Sequences from set 2 and set 3 were derived from CoVAbDab (8) and comprised sequences derived from published nonneutralizing antibodies (set 2) and published neutralizing antibodies (set 3).

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ISSN: 0021-9738 (print), 1558-8238 (online)

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