Article tools
  • View PDF
  • Cite this article
  • E-mail this article
  • Send a letter
  • Information on reuse
  • Standard abbreviations
  • Article usage
Author information
Need help?


BCR-ABL kinase is dead; long live the CML stem cell

Alexander Perl and Martin Carroll

Division of Hematology and Oncology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Address correspondence to: Martin Carroll, Room 708, BRB 2/3, 421 Curie Blvd., Philadelphia, Pennsylvania 19104, USA. Phone: 215.573.5217; Fax: 215.573.7049; E-mail:

First published December 13, 2010

Chronic myeloid leukemia (CML) is a hematopoietic disease characterized by expansion of myeloid blood cells. It is caused by the t(9;22) chromosomal translocation that results in the expression of the fusion tyrosine kinase BCR-ABL. Tyrosine kinase inhibitor (TKI) therapy has led to long-term remissions, but patients remain BCR-ABL+. There is agreement that TKIs do not kill CML stem cells; however, it is controversial whether this is because of a lack of BCR-ABL kinase inhibition in CML stem cells or because CML stem cells do not require BCR-ABL for survival. In this issue of the JCI, Corbin and colleagues provide definitive evidence that BCR-ABL is kinase active in CML stem cells and that TKIs inhibit this kinase activity without affecting CML stem cell survival. Rather, CML stem cells revert to a normal dependence on cytokines for survival and proliferation. These results demonstrate that the CML stem cell is not BCR-ABL addicted and have important implications for developing curative therapeutic approaches to CML.

See the related article beginning on page 396.

Chronic myeloid leukemia (CML) is unique among human malignancies in its 1:1 association with the BCR-ABL oncogene, which is generated by the hallmark Philadelphia chromosome (Ph) that results from a (9;22)(q34;q11) reciprocal translocation that juxtaposes the Abelson murine leukemia viral oncogene homolog 1 (ABL) gene normally located on chromosome 9 with the breakpoint cluster region (BCR) gene on chromosome 22. Similarly, it is unique as the poster child for targeted therapeutics, in that the ABL kinase inhibitor imatinib has been spectacularly successful at durable restoration of Ph hematopoiesis and control of progression from CML chronic phase to blast crisis. Recent results from the earliest large trial of imatinib in North America have demonstrated a nearly 90% survival rate after 8 years of follow-up (1, 2). Despite this clinical success, BCR-ABL–containing hematopoietic cells fail to be fully eradicated in the vast majority of patients (3). As assessed by quantitative RT-PCR, BCR-ABL transcripts in the blood and/or bone marrow remain measurable and generally stable for years during therapy (3). Importantly, the residual clones are fully capable of restoring leukemic disease, as noted by expansion of the malignant clone in most patients who discontinue imatinib therapy. Although it has been recently reported that a sustained, leukemia-free state can be maintained in rare individuals after controlled imatinib discontinuation, CML recurrence generally occurs even among patients who previously achieved RT-PCR negative tests for several years (4, 5). Thus, lifelong daily tyrosine kinase inhibitor (TKI) therapy is currently recommended for all patients newly diagnosed with CML. This approach incurs a substantial financial cost, is potentially limited in efficacy by patient compliance, and can be associated with severe side effects and/or secondary medical complications in some patients (6, 7). Hence, the scientific community has embarked on detailed, mechanistic studies of imatinib resistance (i.e., therapeutic failure) and persistence of BCR-ABL–containing hematopoietic cells. In this issue of the JCI, Corbin and colleagues provide new insights into this problem (8).

Imatinib resistance is distinct from BCR-ABL persistence

Importantly, the primary reason for early therapeutic failure of imatinib appears to differ from the probable causes of molecular persistence. Most patients whose leukemia initially responds to imatinib but then soon become resistant show emergence of secondary Ph+ clones bearing mutations in BCR-ABL itself (9, 10). These mutations impair the ability of imatinib to bind to, and thus inhibit, the enzymatic activity of the BCR-ABL kinase. This necessitates therapy with second-generation BCR-ABL inhibitors (e.g., dasatinib and nilotinib) that show more potent activity against native BCR-ABL as well as many of the described imatinib resistance mutations (1113). Interestingly, low levels of these imatinib-resistant subclones can be demonstrated to precede imatinib therapy (10, 14). Thus, they likely represent clonal diversity of Ph+ hematopoiesis at the time of disease diagnosis; and, upon clearance of the major Ph+ clone during imatinib therapy, the imatinib-resistant minor clone now exhibits a relative growth advantage and replaces normal hematopoiesis (15). As would be predicted by this model, the outgrowth of imatinib-binding resistance mutations in BCR-ABL occurs early after the initiation of therapy, and their incidence actually appears to decrease with prolonged TKI therapy (16). Thus, imatinib resistance mutations do not explain the common finding of stable persistence of BCR-ABL+ cells during years of imatinib therapy, raising the question of whether molecular persistence is BCR-ABL dependent or independent and whether its natural history is sinister or benign.

The CML stem cell and BCR-ABL

This question has led to a series of investigations of the CML stem cell. It is generally agreed that the leukemia-initiating cell in CML is a BCR-ABL+ HSC that, per current knowledge, is immmunophenotypically indistinguishable from normal HSCs and has the phenotype LinCD34+CD38. The Holyoake lab was the first to demonstrate that CD34+ cells from the bone marrow of patients with CML are able to survive in the presence of imatinib and other ABL kinase inhibitors (17). Others have confirmed this observation, but there is substantial controversy as to whether TKIs actually inhibit BCR-ABL kinase in the quiescent stem cell fraction of CML cells. Copland and colleagues did not see consistent inhibition of crk-like protein (CrkL) phosphorylation (18), a surrogate marker for BCR-ABL activation, in CD34+ cells treated with dasatinib, but Konig and colleagues later showed inhibition of CrkL phosphorylation by both imatinib and the more potent ABL kinase inhibitor nilotinib (19). Importantly, Copland and colleagues used intracellular phospho-flow cytometry to assess CrkL phosphorylation (18), whereas Konig et al. used Western blotting (19). The field has continued to be split on this critical point. Several groups have proposed mechanisms to explain how CML stem cells escape from imatinib and other TKIs, including low intracellular imatinib levels (either caused by reduced expression of imatinib uptake drug transporters or the result of excessive expression of efflux pumps), altered BCR-ABL expression level, and lack of CML stem cell dependence on BCR-ABL expression (20, 21). The point is critical in moving forward therapeutically since, if BCR-ABL is active in stem cells, we need better ways to inhibit BCR-ABL activity. Alternatively, if it is inhibited, then the CML stem cells persist independently of BCR-ABL activity, suggesting that other approaches to therapy are justified.

In this issue of the JCI, Corbin et al. provide a thorough look at BCR-ABL signal transduction in primary CML stem and progenitor populations to determine whether BCR-ABL is indeed a therapeutic target in quiescent cells (8). The authors made extensive use of phospho-flow cytometry and Western blotting to examine signal transduction in stem and progenitor cells from primary patient samples. These experiments were complemented by immunohistochemical staining of sorted stem and progenitor populations to clarify kinase inhibition for cases in which phospho-flow showed impaired sensitivity. These experiments are of unprecedented quality in this area of investigation and greatly clarify why BCR-ABL is an outstanding target in CML progenitors, but not a rational therapeutic target in CML stem cell populations. The authors unequivocally showed that BCR-ABL was constitutively activated in both CD34+CD38CD133+ stem and CD34+CD38+ progenitor populations. They then showed that imatinib potently and equally inhibited BCR-ABL kinase activity in cells from each compartment and that this kinase inhibition occurred at clinically achievable drug concentrations, regardless of whether cells were cycling or quiescent. These biochemical signaling experiments were paired with functional assays to examine the growth, apoptosis, and survival effects of signal inhibition on each cell type. As expected, imatinib induced potent antiproliferative and proapoptotic effects on CML progenitors in the absence of cytokines. However, CML stem cells treated with imatinib showed growth and survival properties essentially identical to those of normal HSCs, regardless of the cytokine milieu. Finally, long-term culture–initiating cell (LTC-IC) experiments, an assay for stem cells, showed trivial changes in the number of CML stem cells compared with normal HSCs following six weeks of imatinib therapy. The use of second-generation BCR-ABL TKIs for a number of these experiments produced results similar to those observed with imatinib. Taken together, these data demonstrate that BCR-ABL kinase is expressed in CML stem cells and that its enzymatic activity is fully sensitive to inhibition by imatinib (Figure 1). Thus, functionally, imatinib restores normal homeostatic growth control and cytokine dependence seen in nonleukemic HSC populations.

Summary of BCR-ABL effects in different classes of CML.Figure 1

Summary of BCR-ABL effects in different classes of CML. In untreated patients with chronic phase CML, BCR-ABL is widely expressed and activated in both the stem and progenitor cell compartment. During effective treatment with imatinib or other TKIs, BCR-ABL is inactivated. This allows BCR-ABL cells to repopulate the progenitor cell compartment while cells that express inactive BCR-ABL persist in the stem cell compartment. The relative level of expression is likely low; the figure is not meant to represent quantitative levels of BCR-ABL persistence. In patients demonstrating imatinib resistance, a mutant BCR-ABL is present in the stem cell compartment that gives rise to progenitor cells with mutant BCR-ABL. The figure represents a steady state, as some reports suggest mutant BCR-ABL may first develop in a progenitor cell and repopulate the stem cell compartment.

Persistence of CML stem cells is independent of BCR-ABL kinase activation

What do the data generated by Corbin et al. (8) tell us about targeted therapy of CML stem cells in the imatinib era? First, they conclusively confirm that the inability of imatinib to eradicate CML stem cells is a BCR-ABL kinase–independent phenomenon. Although it has been argued that CML progenitor cells are addicted to BCR-ABL signaling for growth and survival, BCR-ABL kinase activity in CML stem cells appears unnecessary for survival (Figure 1). Therefore, if the only defined property that clearly differentiates normal HSCs from CML stem cells is the presence of BCR-ABL, not its function, then efforts to enhance BCR-ABL inhibition in stem cells via the development of more potent inhibitors — blockade of efflux pumps and the like — have little rationale, and this approach should be abandoned.

It is worth asking how this result can be explained. BCR-ABL is a potent, constitutively activated tyrosine kinase, and multiple reports in both cell lines and primary malignant cells demonstrate that BCR-ABL activates signaling pathways. The study by Corbin et al. (8) provides some insight into BCR-ABL signaling in purified CD34+ cells, only a subset of which are true HSCs. Recent data have demonstrated the importance of phosphatases in regulating signal transduction in murine HSCs. In the absence of a more highly refined definition of HSCs in human cells, we would hypothesize that the phosphatases — and other regulatory proteins that keep HSCs quiescent while sitting in a bath of cytokines in the bone marrow — also act to inhibit the effects of BCR-ABL on inducing sustained activation of multiple signaling pathways leading to mitogenesis. In other words, BCR-ABL is always oncogenic, but it is mitogenic only in the proper (progenitor) cell compartment.

This is not to say that targeting the CML stem cell is impossible or should be cast off as a therapeutic goal. Eight-year survival for a previously uniformly fatal disease is a wonderful result of imatinib therapy, but it is definitely not the same as a cure. In this context, the unanswered question is how to target CML stem cells independent of BCR-ABL and without toxicity to normal HSCs. It is likely that drugs that showed activity in CML but were shelved in the wake of the success of imatinib could see renewed interest in the clinic. For example, nonspecific immunotherapy such as interferon could be entertained as a possible adjunct to imatinib, an idea that has been supported by intriguing, although largely anecdotal, reports of long-term disease control using this strategy (4, 22). Clinical trials are ongoing to determine whether this combined approach is indeed curative and/or affords any potential advantage over therapy with imatinib alone. Other approaches with leukemia-specific immunotherapy or arsenicals are also worthy of further examination, as are novel approaches targeting recently identified regulators of CML stemness, such as arachidonate 5-lipoxygenase (Alox5) and Hedgehog (23, 24), or regulators of CML stem cell survival, such as autophagy (25).

Overall, Corbin et al. provide data suggesting that CML is, at its core, a disease of stem cells, but its clinical manifestations during chronic phase occur because of a progenitor cell phenotype (8). Indeed, the stem cell disease is only unmasked once adequate therapy for the progenitor cell fraction has been provided. The data shown in this article demonstrate that for patients being treated with imatinib, BCR-ABL kinase is most likely dead, but the CML stem cell lives on. Time will tell if this will remain the status quo.


M. Carroll is supported by NIH grant CA-100885.


Conflict of interest: M. Carroll has received research support from Sanofi-Aventis Corp.

Citation for this article:J Clin Invest. 2011;121(1):22–25. doi:10.1172/JCI43605.

See the related article beginning on page 396.


  1. Deininger M, et al. International randomized study of interferon Vs STI571 (IRIS) 8-year follow up: Sustained survival and low risk for progression or events in patients with newly diagnosed chronic myeloid leukemia in chronic phase (CML-CP) treated with Imatinib. ASH Annual Meeting Abstracts. 2009;114:1126.
  2. O’Brien SG, et al. Imatinib compared with interferon and low-dose cytarabine for newly diagnosed chronic-phase chronic myeloid leukemia. N Engl J Med. 2003;348(11):994–1004.
    View this article via: PubMed CrossRef
  3. Hughes TP, et al. Frequency of major molecular responses to imatinib or interferon alfa plus cytarabine in newly diagnosed chronic myeloid leukemia. N Engl J Med. 2003;349(15):1423–1432.
    View this article via: PubMed CrossRef
  4. Rousselot P, et al. Imatinib mesylate discontinuation in patients with chronic myelogenous leukemia in complete molecular remission for more than 2 years. Blood. 2007;109(1):58–60.
    View this article via: PubMed CrossRef
  5. Mahon FX, et al. Discontinuation of imatinib in patients with chronic myeloid leukaemia who have maintained complete molecular remission for at least 2 years: the prospective, multicentre Stop Imatinib (STIM) trial. Lancet Oncol. 2010;11(11):1029–1035.
    View this article via: PubMed CrossRef
  6. Brouard MC, Prins C, Mach-Pascual S, Saurat JH. Acute generalized exanthematous pustulosis associated with STI571 in a patient with chronic myeloid leukemia. Dermatology. 2001;203(1):57–59.
    View this article via: PubMed CrossRef
  7. Larson RA, et al. Imatinib pharmacokinetics and its correlation with response and safety in chronic-phase chronic myeloid leukemia: a subanalysis of the IRIS study. Blood. 2008;111(8):4022–4028.
    View this article via: PubMed CrossRef
  8. Corbin AS, Agarwal A, Loriaux M, Cortes J, Deininger MW, Druker BJ. Human chronic myeloid leukemia stem cells are insensitive to imatinib despite inhibition of BCR-ABL activity. J Clin Invest. 2010;121(1):396–409.
    View this article via:
  9. Gorre ME, et al. Clinical resistance to STI-571 cancer therapy caused by BCR-ABL gene mutation or amplification. Science. 2001;293(5531):876–880.
    View this article via: PubMed CrossRef
  10. Shah NP, et al. Multiple BCR-ABL kinase domain mutations confer polyclonal resistance to the tyrosine kinase inhibitor imatinib (STI571) in chronic phase and blast crisis chronic myeloid leukemia. Cancer Cell. 2002;2(2):117–125.
    View this article via: PubMed CrossRef
  11. Shah NP, Tran C, Lee FY, Chen P, Norris D, Sawyers CL. Overriding imatinib resistance with a novel ABL kinase inhibitor. Science. 2004;305(5682):399–401.
    View this article via: PubMed CrossRef
  12. Kantarjian H, et al. Nilotinib in imatinib-resistant CML and Philadelphia chromosome-positive ALL. N Engl J Med. 2006;354(24):2542–2551.
    View this article via: PubMed CrossRef
  13. Talpaz M, et al. Dasatinib in imatinib-resistant Philadelphia chromosome-positive leukemias. N Engl J Med. 2006;354(24):2531–2541.
    View this article via: PubMed CrossRef
  14. Roche-Lestienne C, et al. Several types of mutations of the Abl gene can be found in chronic myeloid leukemia patients resistant to STI571, and they can pre-exist to the onset of treatment. Blood. 2002;100(3):1014–1018.
    View this article via: PubMed
  15. Shah NP, Sawyers CL. Mechanisms of resistance to STI571 in Philadelphia chromosome-associated leukemias. Oncogene. 2003;22(47):7389–7395.
    View this article via: PubMed CrossRef
  16. Druker BJ, et al. Five-year follow-up of patients receiving imatinib for chronic myeloid leukemia. N Engl J Med. 2006;355(23):2408–2417.
    View this article via: PubMed CrossRef
  17. Graham SM, et al. Primitive, quiescent, Philadelphia-positive stem cells from patients with chronic myeloid leukemia are insensitive to STI571 in vitro. Blood. 2002;99(1):319–325.
    View this article via: PubMed CrossRef
  18. Copland M, et al. Dasatinib (BMS-354825) targets an earlier progenitor population than imatinib in primary CML but does not eliminate the quiescent fraction. Blood. 2006;107(11):4532–4539.
    View this article via: PubMed CrossRef
  19. Konig H, et al. Enhanced BCR-ABL kinase inhibition does not result in increased inhibition of downstream signaling pathways or increased growth suppression in CML progenitors. Leukemia. 2008;22(4):748–755.
    View this article via: PubMed CrossRef
  20. Jiang X, et al. Chronic myeloid leukemia stem cells possess multiple unique features of resistance to BCR-ABL targeted therapies. Leukemia. 2007;21(5):926–935.
    View this article via: PubMed
  21. Thomas J, Wang L, Clark RE, Pirmohamed M. Active transport of imatinib into and out of cells: implications for drug resistance. Blood. 2004;104(12):3739–3745.
    View this article via: PubMed
  22. Burchert A, et al. Sustained molecular response with interferon alfa maintenance after induction therapy with imatinib plus interferon alfa in patients with chronic myeloid leukemia. J Clin Oncol. 2010;28(8):1429–1435.
    View this article via: PubMed CrossRef
  23. Zhao C, et al. Hedgehog signalling is essential for maintenance of cancer stem cells in myeloid leukaemia. Nature. 2009;458(7239):776–779.
    View this article via: PubMed CrossRef
  24. Chen Y, Hu Y, Zhang H, Peng C, Li S. Loss of the Alox5 gene impairs leukemia stem cells and prevents chronic myeloid leukemia. Nat Genet. 2009;41(7):783–792.
    View this article via: PubMed CrossRef
  25. Bellodi C, et al. Targeting autophagy potentiates tyrosine kinase inhibitor-induced cell death in Philadelphia chromosome-positive cells, including primary CML stem cells. J Clin Invest. 2009;119(5):1109–1123.
    View this article via: PubMed