[HTML][HTML] CUT&Tag for efficient epigenomic profiling of small samples and single cells

HS Kaya-Okur, SJ Wu, CA Codomo, ES Pledger… - Nature …, 2019 - nature.com
HS Kaya-Okur, SJ Wu, CA Codomo, ES Pledger, TD Bryson, JG Henikoff, K Ahmad
Nature communications, 2019nature.com
Many chromatin features play critical roles in regulating gene expression. A complete
understanding of gene regulation will require the mapping of specific chromatin features in
small samples of cells at high resolution. Here we describe Cleavage Under Targets and
Tagmentation (CUT&Tag), an enzyme-tethering strategy that provides efficient high-
resolution sequencing libraries for profiling diverse chromatin components. In CUT&Tag, a
chromatin protein is bound in situ by a specific antibody, which then tethers a protein A-Tn5 …
Abstract
Many chromatin features play critical roles in regulating gene expression. A complete understanding of gene regulation will require the mapping of specific chromatin features in small samples of cells at high resolution. Here we describe Cleavage Under Targets and Tagmentation (CUT&Tag), an enzyme-tethering strategy that provides efficient high-resolution sequencing libraries for profiling diverse chromatin components. In CUT&Tag, a chromatin protein is bound in situ by a specific antibody, which then tethers a protein A-Tn5 transposase fusion protein. Activation of the transposase efficiently generates fragment libraries with high resolution and exceptionally low background. All steps from live cells to sequencing-ready libraries can be performed in a single tube on the benchtop or a microwell in a high-throughput pipeline, and the entire procedure can be performed in one day. We demonstrate the utility of CUT&Tag by profiling histone modifications, RNA Polymerase II and transcription factors on low cell numbers and single cells.
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