Phosphorothioate cap analogs stabilize mRNA and increase translational efficiency in mammalian cells

E Grudzien-Nogalska, J Jemielity, J Kowalska… - Rna, 2007 - rnajournal.cshlp.org
E Grudzien-Nogalska, J Jemielity, J Kowalska, E Darzynkiewicz, RE Rhoads
Rna, 2007rnajournal.cshlp.org
Capped RNAs synthesized by in vitro transcription have found wide utility for studying
mRNA function and metabolism and for producing proteins of interest. We characterize here
a recently synthesized series of cap analogs with improved properties that contain a sulfur
substitution for a nonbridging oxygen in either the α-, β-, or γ-phosphate moieties, m2 7, 2′-
O GpppSG, m2 7, 2′-O GppSpG, and m2 7, 2′-O GpSppG, respectively. The new
compounds were also modified at the 2′-O position of the m7Guo to make them anti …
Capped RNAs synthesized by in vitro transcription have found wide utility for studying mRNA function and metabolism and for producing proteins of interest. We characterize here a recently synthesized series of cap analogs with improved properties that contain a sulfur substitution for a nonbridging oxygen in either the α-, β-, or γ-phosphate moieties, m2 7,2′-O GpppSG, m2 7,2′-O GppSpG, and m2 7,2′-O GpSppG, respectively. The new compounds were also modified at the 2′-O position of the m7Guo to make them anti-reverse cap analogs (ARCAs), i.e., they are incorporated exclusively in the correct orientation during in vitro transcription. Each of the S-ARCAs exists in two diastereoisomeric forms (D1 and D2) that can be resolved by reverse-phase HPLC. A major in vivo pathway for mRNA degradation is initiated by removal of the cap by the pyrophosphatase Dcp1/Dcp2, which cleaves between the α- and β-phosphates. Oligonucleotides capped with m2 7,2′-O GppSpG (D2) were completely resistant to hydrolysis by recombinant human Dcp2 in vitro, whereas those capped with m2 7,2′-O GppSpG (D1) and both isomers of m2 7,2′-O GpppSG were partially resistant. Luciferase mRNA capped with m2 7,2′-O GppSpG (D2) had a t 1/2 of 257 min in cultured HC11 mammary epithelial cells compared with 86 min for m7Gp3G-capped mRNA. Luciferase mRNAs capped with m2 7,2′-O GppSpG (D1) and m2 7,2′-O GppSpG (D2) were translated 2.8-fold and 5.1-fold, respectively, more efficiently in HC11 cells than those capped with m7Gp3G. The greater yield of protein due to combining higher translational efficiency with longer t 1/2 of mRNA should benefit applications that utilize RNA transfection such as protein production, anti-cancer immunization, and gene therapy.
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