[HTML][HTML] Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines

E Cano-Gamez, B Soskic, TI Roumeliotis, E So… - Nature …, 2020 - nature.com
E Cano-Gamez, B Soskic, TI Roumeliotis, E So, DJ Smyth, M Baldrighi, D Willé, N Nakic
Nature communications, 2020nature.com
Naïve CD4+ T cells coordinate the immune response by acquiring an effector phenotype in
response to cytokines. However, the cytokine responses in memory T cells remain largely
understudied. Here we use quantitative proteomics, bulk RNA-seq, and single-cell RNA-seq
of over 40,000 human naïve and memory CD4+ T cells to show that responses to cytokines
differ substantially between these cell types. Memory T cells are unable to differentiate into
the Th2 phenotype, and acquire a Th17-like phenotype in response to iTreg polarization …
Abstract
Naïve CD4+ T cells coordinate the immune response by acquiring an effector phenotype in response to cytokines. However, the cytokine responses in memory T cells remain largely understudied. Here we use quantitative proteomics, bulk RNA-seq, and single-cell RNA-seq of over 40,000 human naïve and memory CD4+ T cells to show that responses to cytokines differ substantially between these cell types. Memory T cells are unable to differentiate into the Th2 phenotype, and acquire a Th17-like phenotype in response to iTreg polarization. Single-cell analyses show that T cells constitute a transcriptional continuum that progresses from naïve to central and effector memory T cells, forming an effectorness gradient accompanied by an increase in the expression of chemokines and cytokines. Finally, we show that T cell activation and cytokine responses are influenced by the effectorness gradient. Our results illustrate the heterogeneity of T cell responses, furthering our understanding of inflammation.
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