[HTML][HTML] Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease

PA Szabo, HM Levitin, M Miron, ME Snyder… - Nature …, 2019 - nature.com
PA Szabo, HM Levitin, M Miron, ME Snyder, T Senda, J Yuan, YL Cheng, EC Bush, P Dogra
Nature communications, 2019nature.com
Human T cells coordinate adaptive immunity in diverse anatomic compartments through
production of cytokines and effector molecules, but it is unclear how tissue site influences T
cell persistence and function. Here, we use single cell RNA-sequencing (scRNA-seq) to
define the heterogeneity of human T cells isolated from lungs, lymph nodes, bone marrow
and blood, and their functional responses following stimulation. Through analysis of> 50,000
resting and activated T cells, we reveal tissue T cell signatures in mucosal and lymphoid …
Abstract
Human T cells coordinate adaptive immunity in diverse anatomic compartments through production of cytokines and effector molecules, but it is unclear how tissue site influences T cell persistence and function. Here, we use single cell RNA-sequencing (scRNA-seq) to define the heterogeneity of human T cells isolated from lungs, lymph nodes, bone marrow and blood, and their functional responses following stimulation. Through analysis of >50,000 resting and activated T cells, we reveal tissue T cell signatures in mucosal and lymphoid sites, and lineage-specific activation states across all sites including distinct effector states for CD8+ T cells and an interferon-response state for CD4+ T cells. Comparing scRNA-seq profiles of tumor-associated T cells to our dataset reveals predominant activated CD8+ compared to CD4+ T cell states within multiple tumor types. Our results therefore establish a high dimensional reference map of human T cell activation in health for analyzing T cells in disease.
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