[HTML][HTML] Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

PA Rice, S Yang, K Mizuuchi, HA Nash - Cell, 1996 - cell.com
PA Rice, S Yang, K Mizuuchi, HA Nash
Cell, 1996cell.com
Integration host factor (IHF) is a small heterodimeric protein that specifically binds to DNA
and functions as an architectural factor in many cellular processes in prokaryotes. Here, we
report the crystal structure of IHF complexed with 35 bp of DNA. The DNA is wrapped around
the protein and bent by> 160°, thus reversing the direction of the helix axis within a very
short distance. Much of the bending occurs at two large kinks where the base stacking is
interrupted by intercalation of a proline residue. IHF contacts the DNA exclusively via the …
Abstract
Integration host factor (IHF) is a small heterodimeric protein that specifically binds to DNA and functions as an architectural factor in many cellular processes in prokaryotes. Here, we report the crystal structure of IHF complexed with 35 bp of DNA. The DNA is wrapped around the protein and bent by >160°, thus reversing the direction of the helix axis within a very short distance. Much of the bending occurs at two large kinks where the base stacking is interrupted by intercalation of a proline residue. IHF contacts the DNA exclusively via the phosphodiester backbone and the minor groove and relies heavily on indirect readout to recognize its binding sequence. One such readout involves a six-base A tract, providing evidence for the importance of a narrow minor groove.
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