[PDF][PDF] Assessing computational amino acid β-turn propensities with a phage-displayed combinatorial library and directed evolution

HJ Hsu, HJ Chang, HP Peng, SS Huang, MY Lin… - Structure, 2006 - cell.com
HJ Hsu, HJ Chang, HP Peng, SS Huang, MY Lin, AS Yang
Structure, 2006cell.com
Structure propensities of amino acids are important determinants in guiding proteins' local
and global structure formation. We constructed a phage display library—a hexa-HIS tag
upstream of a CXXC (X stands for any of the 20 natural amino acids) motif appending N-
terminal to the minor capsid protein pIII of M13KE filamentous phage—and developed a
novel directed-evolution procedure to select for amino acid sequences forming increasingly
stable β-turns in the disulfide-bridged CXXC motif. The sequences that emerged from the …
Summary
Structure propensities of amino acids are important determinants in guiding proteins' local and global structure formation. We constructed a phage display library—a hexa-HIS tag upstream of a CXXC (X stands for any of the 20 natural amino acids) motif appending N-terminal to the minor capsid protein pIII of M13KE filamentous phage—and developed a novel directed-evolution procedure to select for amino acid sequences forming increasingly stable β-turns in the disulfide-bridged CXXC motif. The sequences that emerged from the directed-evolution cycles were in good agreement with type II β-turn propensities derived from surveys of known protein structures, in particular, Pro-Gly forming a type II β-turn. The agreement strongly supported the notion that β-turn formation plays an active role in initiating local structure folding in proteins.
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