[HTML][HTML] Replicative DNA Polymerase δ but Not ε Proofreads Errors in Cis and in Trans

CL Flood, GP Rodriguez, G Bao, AH Shockley… - PLoS …, 2015 - journals.plos.org
CL Flood, GP Rodriguez, G Bao, AH Shockley, YW Kow, GF Crouse
PLoS genetics, 2015journals.plos.org
It is now well established that in yeast, and likely most eukaryotic organisms, initial DNA
replication of the leading strand is by DNA polymerase ε and of the lagging strand by DNA
polymerase δ. However, the role of Pol δ in replication of the leading strand is uncertain. In
this work, we use a reporter system in Saccharomyces cerevisiae to measure mutation rates
at specific base pairs in order to determine the effect of heterozygous or homozygous
proofreading-defective mutants of either Pol ε or Pol δ in diploid strains. We find that wild …
It is now well established that in yeast, and likely most eukaryotic organisms, initial DNA replication of the leading strand is by DNA polymerase ε and of the lagging strand by DNA polymerase δ. However, the role of Pol δ in replication of the leading strand is uncertain. In this work, we use a reporter system in Saccharomyces cerevisiae to measure mutation rates at specific base pairs in order to determine the effect of heterozygous or homozygous proofreading-defective mutants of either Pol ε or Pol δ in diploid strains. We find that wild-type Pol ε molecules cannot proofread errors created by proofreading-defective Pol ε molecules, whereas Pol δ can not only proofread errors created by proofreading-defective Pol δ molecules, but can also proofread errors created by Pol ε-defective molecules. These results suggest that any interruption in DNA synthesis on the leading strand is likely to result in completion by Pol δ and also explain the higher mutation rates observed in Pol δ-proofreading mutants compared to Pol ε-proofreading defective mutants. For strains reverting via AT→GC, TA→GC, CG→AT, and GC→AT mutations, we find in addition a strong effect of gene orientation on mutation rate in proofreading-defective strains and demonstrate that much of this orientation dependence is due to differential efficiencies of mispair elongation. We also find that a 3′-terminal 8 oxoG, unlike a 3′-terminal G, is efficiently extended opposite an A and is not subject to proofreading. Proofreading mutations have been shown to result in tumor formation in both mice and humans; the results presented here can help explain the properties exhibited by those proofreading mutants.
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