VMD: visual molecular dynamics

W Humphrey, A Dalke, K Schulten - Journal of molecular graphics, 1996 - Elsevier
VMD is a molecular graphics program designed for the display and analysis of molecular
assemblies, in particular biopolymers such as proteins and nucleic acids. VMD can
simultaneously display any number of structures using a wide variety of rendering styles and
coloring methods. Molecules are displayed as one or more “representations,” in which each
representation embodies a particular rendering method and coloring scheme for a selected
subset of atoms. The atoms displayed in each representation are chosen using an extensive …