[HTML][HTML] The structural dynamics and energetics of an immunodominant T cell receptor are programmed by its Vβ domain

J Ishizuka, GBE Stewart-Jones, A van der Merwe… - Immunity, 2008 - cell.com
J Ishizuka, GBE Stewart-Jones, A van der Merwe, JI Bell, AJ McMichael, EY Jones
Immunity, 2008cell.com
Immunodominant and public T cell receptor (TCR) usage is relatively common in many viral
diseases yet surprising in the context of the large naive TCR repertoire. We examined the
highly conserved Vβ17: Vα10. 2 JM22 T cell response to the influenza matrix peptide (58-
66)-HLA-A∗ 0201 (HLA-A2-flu) through extensive kinetic, thermodynamic, and structural
analyses. We found several conformational adjustments that accompany JM22-HLA-A2-flu
binding and identified a binding" hotspot" within the Vβ domain of the TCR. Within this …
Summary
Immunodominant and public T cell receptor (TCR) usage is relatively common in many viral diseases yet surprising in the context of the large naive TCR repertoire. We examined the highly conserved Vβ17:Vα10.2 JM22 T cell response to the influenza matrix peptide (58-66)-HLA-A0201 (HLA-A2-flu) through extensive kinetic, thermodynamic, and structural analyses. We found several conformational adjustments that accompany JM22-HLA-A2-flu binding and identified a binding "hotspot" within the Vβ domain of the TCR. Within this hotspot, key germline-encoded CDR1 and CDR2 loop residues and a crucial but commonly coded residue in the hypervariable region of CDR3 provide the basis for the substantial bias in the selection of the germline-encoded Vβ17 domain. The chances of having a substantial number of T cells in the naive repertoire that have HLA-A2-flu-specific Vβ17 receptors may consequently be relatively high, thus explaining the immunodominant usage of this clonotype.
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