The CDR3 regions of an immunodominant T cell receptor dictate the'energetic landscape'of peptide-MHC recognition

NA Borg, LK Ely, T Beddoe, WA Macdonald… - Nature …, 2005 - nature.com
NA Borg, LK Ely, T Beddoe, WA Macdonald, HH Reid, CS Clements, AW Purcell
Nature immunology, 2005nature.com
The energetic bases of T cell recognition are unclear. Here, we studied the'energetic
landscape'of peptide–major histocompatibility complex (pMHC) recognition by an
immunodominant αβ T cell receptor (TCR). We quantified and evaluated the effect of natural
and systematic substitutions in the complementarity-determining region (CDR) loops on
ligand binding in the context of the structural detail of each component of the
immunodominant TCR-pMHC complex. The CDR1 and CDR2 loops contributed minimal …
Abstract
The energetic bases of T cell recognition are unclear. Here, we studied the 'energetic landscape' of peptide–major histocompatibility complex (pMHC) recognition by an immunodominant αβ T cell receptor (TCR). We quantified and evaluated the effect of natural and systematic substitutions in the complementarity-determining region (CDR) loops on ligand binding in the context of the structural detail of each component of the immunodominant TCR-pMHC complex. The CDR1 and CDR2 loops contributed minimal energy through direct recognition of the antigen and instead had a chief function in stabilizing the ligated CDR3 loops. The underlying energetic basis for recognition lay in the CDR3 loops. Therefore the energetic burden of the CDR loops in the TCR-pMHC interaction is variable among TCRs, reflecting the inherent adaptability of the TCR in ligating different ligands.
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