NARWHAL, a primary analysis pipeline for NGS data
Bioinformatics, 2012•academic.oup.com
The NARWHAL software pipeline has been developed to automate the primary analysis of
Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool
with open-source aligners and automated quality assessment. The entire pipeline can be
run using only one simple sample-sheet for diverse sequencing applications. NARWHAL
creates a sample-oriented data structure and outperforms existing tools in speed.
Availability: https://trac. nbic. nl/narwhal/Contact: w. vanijcken@ erasmusmc. nl …
Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool
with open-source aligners and automated quality assessment. The entire pipeline can be
run using only one simple sample-sheet for diverse sequencing applications. NARWHAL
creates a sample-oriented data structure and outperforms existing tools in speed.
Availability: https://trac. nbic. nl/narwhal/Contact: w. vanijcken@ erasmusmc. nl …
Abstract
Summary: The NARWHAL software pipeline has been developed to automate the primary analysis of Illumina sequencing data. This pipeline combines a new and flexible de-multiplexing tool with open-source aligners and automated quality assessment. The entire pipeline can be run using only one simple sample-sheet for diverse sequencing applications. NARWHAL creates a sample-oriented data structure and outperforms existing tools in speed.
Availability: https://trac.nbic.nl/narwhal/
Contact: w.vanijcken@erasmusmc.nl
Supplementary information: Supplementary data are available at Bioinformatics online.
Oxford University Press