MADE4: an R package for multivariate analysis of gene expression data
AC Culhane, J Thioulouse, G Perrière… - …, 2005 - academic.oup.com
Bioinformatics, 2005•academic.oup.com
MADE4, m icroarray ade4, is a software package that facilitates multivariate analysis of
microarray gene-expression data. MADE4 accepts a wide variety of gene-expression data
formats. MADE4 takes advantage of the extensive multivariate statistical and graphical
functions in the R package ade4, extending these for application to microarray data. In
addition, MADE4 provides new graphical and visualization tools that aid in interpretation of
multivariate analysis of microarray data. Availability: The R package MADE4 is available …
microarray gene-expression data. MADE4 accepts a wide variety of gene-expression data
formats. MADE4 takes advantage of the extensive multivariate statistical and graphical
functions in the R package ade4, extending these for application to microarray data. In
addition, MADE4 provides new graphical and visualization tools that aid in interpretation of
multivariate analysis of microarray data. Availability: The R package MADE4 is available …
Abstract
Summary: MADE4, microarray ade4, is a software package that facilitates multivariate analysis of microarray gene-expression data. MADE4 accepts a wide variety of gene-expression data formats. MADE4 takes advantage of the extensive multivariate statistical and graphical functions in the R package ade4, extending these for application to microarray data. In addition, MADE4 provides new graphical and visualization tools that aid in interpretation of multivariate analysis of microarray data.
Availability: The R package MADE4 is available from Bioconductor http://bioinf.vcd.ie/software and from Bioconductor http://www.bioconductor.org
Contact: aedin.culhane@ucd.ie
Supplementary information: MADE4 is well documented. There are tutorials, in the form of vignettes, which describe typical analyses. In addition, the MADE4 manual provides descriptions and examples for each function.
Oxford University Press